Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10f13r
         (727 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    24   1.7  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   1.7  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   2.2  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    21   9.0  
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    21   9.0  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = -1

Query: 652 KYNQICLFYHSCWVTGPAFVTTTGPVVLLIKILDW 548
           +Y+ + +++H     G   +   GP VLL+ +L W
Sbjct: 199 EYSMLLVYFHLQRHMGNFLIQVYGPCVLLV-VLSW 232


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 186 TRRRQGRAKGAHRTDRSRSQGDQGPERGNP 97
           T++ Q  + GA     S  Q  Q P+RG+P
Sbjct: 10  TQQSQQPSSGAPGPQPSPHQSPQAPQRGSP 39


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 339 HHDVPIGSLHRNLFRREVLHVQ 404
           H D+PI   H +L   +VL+ Q
Sbjct: 64  HRDLPIYQSHHHLHHHQVLYQQ 85


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -3

Query: 218 GVLTITAPRKVPDAVKGERKVPIAQTGPVRKEIKDQSE 105
           G  T T      D +  E  +PI +TG   K I ++ E
Sbjct: 141 GKSTTTTVEVKRDIINPEDVIPIRRTGEGSKPIFEREE 178


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 12/40 (30%), Positives = 16/40 (40%)
 Frame = -2

Query: 225 IRRGSHHHRAEEGTRRRQGRAKGAHRTDRSRSQGDQGPER 106
           I R   H R   G +R+  R K      R  +    GP+R
Sbjct: 3   ISRDHWHKRRATGGKRKPIRKKRKFELGRPAANTKLGPQR 42


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,331
Number of Sequences: 438
Number of extensions: 4764
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)