Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10f13r
(727 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g10250.1 68417.m01682 22.0 kDa ER small heat shock protein (H... 38 0.009
At1g53540.1 68414.m06074 17.6 kDa class I small heat shock prote... 35 0.063
At2g27100.1 68415.m03256 C2H2 zinc-finger protein SERRATE (SE) i... 34 0.11
At5g59720.1 68418.m07486 18.1 kDa class I heat shock protein (HS... 33 0.15
At3g46230.1 68416.m05004 17.4 kDa class I heat shock protein (HS... 33 0.15
At2g29500.1 68415.m03583 17.6 kDa class I small heat shock prote... 33 0.19
At4g21870.1 68417.m03163 26.5 kDa class P-related heat shock pro... 30 1.4
At3g49540.1 68416.m05414 expressed protein 30 1.4
At4g14830.1 68417.m02280 expressed protein 29 3.1
At2g28680.1 68415.m03486 cupin family protein similar to legumin... 29 4.1
At2g20360.1 68415.m02377 expressed protein 28 5.5
At1g66720.1 68414.m07584 S-adenosyl-L-methionine:carboxyl methyl... 28 5.5
At5g07100.2 68418.m00807 WRKY family transcription factor SPF1 p... 28 7.2
At5g07100.1 68418.m00806 WRKY family transcription factor SPF1 p... 28 7.2
At4g17520.1 68417.m02621 nuclear RNA-binding protein, putative s... 28 7.2
At1g76770.1 68414.m08934 heat shock protein-related contains sim... 28 7.2
At1g73710.1 68414.m08535 pentatricopeptide (PPR) repeat-containi... 28 7.2
At1g62570.1 68414.m07059 flavin-containing monooxygenase family ... 28 7.2
At1g28060.1 68414.m03435 small nuclear ribonucleoprotein family ... 28 7.2
At5g18190.1 68418.m02135 protein kinase family protein contains ... 27 9.6
At3g56100.1 68416.m06235 leucine-rich repeat transmembrane prote... 27 9.6
>At4g10250.1 68417.m01682 22.0 kDa ER small heat shock protein
(HSP22.0-ER) identical to endomembrane-localized small
heat shock protein GI:511795 from [Arabidopsis thaliana]
Length = 195
Score = 37.5 bits (83), Expect = 0.009
Identities = 20/48 (41%), Positives = 31/48 (64%)
Frame = -3
Query: 290 QFVRRYALPEGAAPETVESRLSSDGVLTITAPRKVPDAVKGERKVPIA 147
+F R++ LP+ E+V+++L + GVLTI + P+ VKG R V IA
Sbjct: 132 KFWRQFKLPDNVDMESVKAKLEN-GVLTINLTKLSPEKVKGPRVVNIA 178
>At1g53540.1 68414.m06074 17.6 kDa class I small heat shock protein
(HSP17.6C-CI) (AA 1-156) identical to (17.6 kDa class I
heat shock protein (HSP 17.6) (AA 1-156)(SP:P13853)
(GI:4376161) (Arabidopsis thaliana) (Nucleic Acids Res.
17 (19), 7995 (1989))
Length = 157
Score = 34.7 bits (76), Expect = 0.063
Identities = 18/50 (36%), Positives = 31/50 (62%)
Frame = -3
Query: 296 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPRKVPDAVKGERKVPIA 147
S +F RR+ LPE A E +++ + +GVL++T P KVP+ + + I+
Sbjct: 109 SGKFTRRFRLPENAKMEEIKASM-ENGVLSVTVP-KVPEKKPEVKSIDIS 156
>At2g27100.1 68415.m03256 C2H2 zinc-finger protein SERRATE (SE)
identical to C2H2 zinc-finger protein SERRATE
GI:14486602 from [Arabidopsis thaliana]
Length = 720
Score = 33.9 bits (74), Expect = 0.11
Identities = 16/32 (50%), Positives = 17/32 (53%)
Frame = -2
Query: 189 GTRRRQGRAKGAHRTDRSRSQGDQGPERGNPG 94
G R R GRA G R DRS Q + GNPG
Sbjct: 582 GRRERDGRANGNDRNDRSEDQQRGDNDGGNPG 613
>At5g59720.1 68418.m07486 18.1 kDa class I heat shock protein
(HSP18.1-CI) identical to 18.2 kDa class I heat shock
protein (HSP 18.2) (SP:P19037)[Arabidopsis thaliana];
contains Pfam profile: PF00011 Hsp20/alpha crystallin
family
Length = 161
Score = 33.5 bits (73), Expect = 0.15
Identities = 18/50 (36%), Positives = 30/50 (60%)
Frame = -3
Query: 296 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPRKVPDAVKGERKVPIA 147
S +F+RR+ LPE A E V++ + +GVLT+ P K P+ + + I+
Sbjct: 111 SGKFMRRFRLPENAKMEEVKATM-ENGVLTVVVP-KAPEKKPQVKSIDIS 158
>At3g46230.1 68416.m05004 17.4 kDa class I heat shock protein
(HSP17.4-CI) identical to 17.4 kDa class I heat shock
protein SP:P19036 from [Arabidopsis thaliana]
Length = 156
Score = 33.5 bits (73), Expect = 0.15
Identities = 19/50 (38%), Positives = 32/50 (64%)
Frame = -3
Query: 296 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPRKVPDAVKGERKVPIA 147
S +F+RR+ LPE A E V++ + +GVL++T P KV ++ + V I+
Sbjct: 108 SGKFMRRFRLPENAKVEEVKASM-ENGVLSVTVP-KVQESKPEVKSVDIS 155
>At2g29500.1 68415.m03583 17.6 kDa class I small heat shock protein
(HSP17.6B-CI) contains Pfam PF00011: Hsp20/alpha
crystallin family; identified in Scharf, K-D., et al,
Cell Stress & Chaperones (2001) 6: 225-237.
Length = 153
Score = 33.1 bits (72), Expect = 0.19
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = -3
Query: 296 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPR 192
S QF RR+ LPE + V++ + +GVLT+T P+
Sbjct: 105 SGQFTRRFRLPENVKMDQVKAAM-ENGVLTVTVPK 138
>At4g21870.1 68417.m03163 26.5 kDa class P-related heat shock
protein (HSP26.5-P) contains Pfam profile: PF00011
Hsp20/alpha crystallin family: identified in Scharf,
K-D., et al,Cell Stress & Chaperones (2001) 6: 225-237.
Length = 134
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/79 (22%), Positives = 33/79 (41%)
Frame = -3
Query: 422 DKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXGYISRQFVRRYALPEGAAPET 243
D ++D+ EEI V+ D ++ + F R++ LPE
Sbjct: 35 DSHTFSVDLPGLRKEEIKVEIEDSIYLIIRTEATPMSPPDQPLKTFKRKFRLPESIDMIG 94
Query: 242 VESRLSSDGVLTITAPRKV 186
+ + DGVLT+ P+++
Sbjct: 95 ISAGYE-DGVLTVIVPKRI 112
>At3g49540.1 68416.m05414 expressed protein
Length = 166
Score = 30.3 bits (65), Expect = 1.4
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Frame = -3
Query: 263 EGAAPETVESRLSSDGVLTITAPRKVPDAVKGERKV---PI-AQTGPVRKEIKDQSEGTQ 96
E AA E E+++ + + + AP KV AV+ E+K P+ A+ PV+ E + E ++
Sbjct: 100 ENAATENAEAKVEA---VAVAAPEKVEVAVEAEKKAEAEPVKAEAEPVKAEAEPVKEESK 156
Query: 95 DAENK 81
E +
Sbjct: 157 QEEKE 161
>At4g14830.1 68417.m02280 expressed protein
Length = 152
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -3
Query: 284 VRRYALPEGAAPETVESRLSSDGVLTITAPR 192
V R+ LPE PE V DG L +T P+
Sbjct: 109 VWRFRLPESTRPELVTVDCDGDGELIVTVPK 139
>At2g28680.1 68415.m03486 cupin family protein similar to legumin
(11S-globulin) from Ginkgo biloba [GI:949869], 11S
globulin from Avena sativa [GI:472867]; contains a 11-S
plant seed storage protein signature (PS00305)
Length = 356
Score = 28.7 bits (61), Expect = 4.1
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Frame = -3
Query: 296 SRQFV-RRYALPEGAAPETVESRLSSDGVLTITAPRKVPDAVKGERK--VPIAQTGPVRK 126
S +FV R + L E + V S+ + +G++ + A K+P+ KG+RK V P+
Sbjct: 141 STEFVGRAWDLDETTVKKLVGSQ-TGNGIVKVDASLKMPEPKKGDRKGFVLNCLEAPLDV 199
Query: 125 EIKD 114
+IKD
Sbjct: 200 DIKD 203
>At2g20360.1 68415.m02377 expressed protein
Length = 402
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +3
Query: 132 NGTGLCDGHLSLSLDGVGYLPRRGDG 209
NGT C SL+ GVG+L R+G G
Sbjct: 36 NGTDNCRYSSSLATKGVGHLARKGTG 61
>At1g66720.1 68414.m07584 S-adenosyl-L-methionine:carboxyl
methyltransferase family protein similar to
defense-related protein cjs1 [Brassica
carinata][GI:14009292][Mol Plant Pathol (2001)
2(3):159-169]
Length = 352
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 286 SSDVTRCLKARRLRLWNRDCHQTGFS 209
+S + + + R LWNRD H TGF+
Sbjct: 151 TSKIPKGISDRNSPLWNRDMHCTGFN 176
>At5g07100.2 68418.m00807 WRKY family transcription factor SPF1
protein - Ipomoea batatas (sweet potato), PIR:S51529
Length = 216
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = -2
Query: 228 VIRRGSHHHRAEEGTRRRQGRAKGAHRTDRSRSQGDQGPE 109
++ +GSH+H + T+R A AH+ + D G +
Sbjct: 72 IVYKGSHNHPKPQSTKRSSSTAIAAHQNSSNGDGKDIGED 111
>At5g07100.1 68418.m00806 WRKY family transcription factor SPF1
protein - Ipomoea batatas (sweet potato), PIR:S51529
Length = 309
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = -2
Query: 228 VIRRGSHHHRAEEGTRRRQGRAKGAHRTDRSRSQGDQGPE 109
++ +GSH+H + T+R A AH+ + D G +
Sbjct: 165 IVYKGSHNHPKPQSTKRSSSTAIAAHQNSSNGDGKDIGED 204
>At4g17520.1 68417.m02621 nuclear RNA-binding protein, putative
similar to nuclear RNA binding protein GI:6492264 from
[Arabidopsis thaliana]
Length = 360
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -2
Query: 216 GSHHHRAEEGTRRRQGRAKGAHRTDRSRSQGDQGPERGNPGCRK 85
G + R+EEG R+G G +R DR S + G + RK
Sbjct: 95 GGGYRRSEEGDGARRGGPVGGYRGDRRGSYSNGGDSGDSERPRK 138
>At1g76770.1 68414.m08934 heat shock protein-related contains
similarity to 17.9 kDa heat-shock protein [Helianthus
annuus] gi|11990130|emb|CAB55634
Length = 244
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/37 (29%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = -3
Query: 293 RQFVRRYALPEGAAPETVESRLSS-DGVLTITAPRKV 186
++F + + +P+ + +++R + DG LT+T P+KV
Sbjct: 93 KEFKKVFRIPDIVILDKIKARFNEEDGTLTVTMPKKV 129
>At1g73710.1 68414.m08535 pentatricopeptide (PPR) repeat-containing
protein low similarity to fertility restorer [Petunia x
hybrida] GI:22128587, post-transcriptional control of
chloroplast gene expression CRP1 [Zea mays] GI:3289002;
contains Pfam profile PF01535: PPR repeat
Length = 991
Score = 27.9 bits (59), Expect = 7.2
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +3
Query: 141 GLCDGHLSLSLDGVGYLPRRGDGENPV 221
G C G + L LD + P+ G ++PV
Sbjct: 240 GWCAGKVDLDLDSIDDFPKNGSAQSPV 266
>At1g62570.1 68414.m07059 flavin-containing monooxygenase family
protein / FMO family protein low similarity to
flavin-containing monooxygenase FMO3 [Rattus norvegicus]
GI:12006730; contains Pfam profile PF00743:
Flavin-binding monooxygenase-like
Length = 461
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = -1
Query: 235 RDCHQTGFSPSPRRGRYPTPSRESERCPSHRPV 137
R+C G+ P R PSR+S R PSHR V
Sbjct: 83 REC--MGYKDFPFVPRGDDPSRDSRRYPSHREV 113
>At1g28060.1 68414.m03435 small nuclear ribonucleoprotein family
protein / snRNP family protein contains similarity to
U4/U6 small nuclear ribonucleoprotein hPrp3 [Homo
sapiens] gi|2708307|gb|AAC51926
Length = 786
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 222 RRGSHHHRAEEGTRRRQGRAKGAHRTDRSRSQG 124
R HH R+ EG++ ++ R+K R DR G
Sbjct: 80 REKHHHERSHEGSKEKESRSK---RKDREEENG 109
>At5g18190.1 68418.m02135 protein kinase family protein contains
Pfam domains, PF00069: Protein kinase domain
Length = 691
Score = 27.5 bits (58), Expect = 9.6
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -2
Query: 486 QTMETTRGCIS*PRFQHKGRQG 421
Q T GC P HKGRQG
Sbjct: 185 QVYNTLNGCYGVPAVHHKGRQG 206
>At3g56100.1 68416.m06235 leucine-rich repeat transmembrane protein
kinase, putative hypothetical proteins - Arabidopsis
thaliana
Length = 719
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -1
Query: 217 GFSPSPRRGRYPTPSRESERCPSHR 143
G+S S P+PS E ER PSHR
Sbjct: 342 GYSVSTPCPTLPSPSPEKERKPSHR 366
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,563,246
Number of Sequences: 28952
Number of extensions: 359501
Number of successful extensions: 1199
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1199
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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