Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10f13f
(595 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26) 62 3e-10
SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12) 54 1e-07
SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26) 53 2e-07
SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26) 53 2e-07
SB_21424| Best HMM Match : HSP20 (HMM E-Value=0) 52 5e-07
SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 5e-07
SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29) 51 6e-07
SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26) 48 4e-06
SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05) 38 0.008
SB_47601| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_32739| Best HMM Match : PA (HMM E-Value=0.19) 29 2.8
SB_32465| Best HMM Match : Chromo (HMM E-Value=3.5e-16) 28 4.9
SB_17040| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_28063| Best HMM Match : ABC_tran (HMM E-Value=0) 28 4.9
SB_53052| Best HMM Match : U79_P34 (HMM E-Value=2.7) 27 8.6
SB_27532| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_24224| Best HMM Match : Lectin_C (HMM E-Value=0) 27 8.6
SB_40478| Best HMM Match : RpoE2 (HMM E-Value=1.9) 27 8.6
>SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26)
Length = 185
Score = 62.1 bits (144), Expect = 3e-10
Identities = 36/93 (38%), Positives = 51/93 (54%), Gaps = 1/93 (1%)
Frame = +3
Query: 300 DKDKFQV-NLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAA 476
D DKFQ+ LDV+ F PEEI+ K +G I V + S++F R Y LPEG
Sbjct: 2 DADKFQIATLDVREFKPEEITCKVENGKIKVSGLQRHESEEG-FDSKEFRRCYNLPEGVD 60
Query: 477 PETVESRLSSDGVLTITAPRKVPDAVKGERKVP 575
++ +R++ DG+L + A +K P A E K P
Sbjct: 61 ESSISTRIAEDGMLHVEALKKSPPATT-ENKAP 92
Score = 48.8 bits (111), Expect = 3e-06
Identities = 28/80 (35%), Positives = 39/80 (48%)
Frame = +3
Query: 300 DKDKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAAP 479
D KF + LDV F PEE+ VK G+ + + +RQF R + LP
Sbjct: 96 DDTKFTLALDVSDFKPEEVDVKVY-GHELSVRARQECEEHGFFTARQFNRHFVLPREVDM 154
Query: 480 ETVESRLSSDGVLTITAPRK 539
+T+ RL DGVL I A ++
Sbjct: 155 DTLVPRLGKDGVLYIEADKR 174
>SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)
Length = 210
Score = 53.6 bits (123), Expect = 1e-07
Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Frame = +3
Query: 279 LGSSIKADKDKFQV-NLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRY 455
L ++ + + DK ++ LDV+++ PEEIS+K G I + Y + +F R Y
Sbjct: 29 LAANTEMEGDKVEIATLDVKNYRPEEISLKVEHGRIKIDGKHKSEGEHG-YETSEFHRSY 87
Query: 456 ALPEGAAPETVESRLSSDGVLTITAPRKVP 545
LP+G TV SR++ DG+L I A + P
Sbjct: 88 NLPDGVDVSTVSSRITGDGLLHIEALKAEP 117
Score = 27.5 bits (58), Expect(2) = 0.071
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 258 LAAASRDLGSSIKADKDKFQVNLDVQHFSPE 350
+ A++ G K D +F V LDV FSP+
Sbjct: 125 VGASTGSAGDIAKIDDKRFTVTLDVSSFSPD 155
Score = 25.8 bits (54), Expect(2) = 0.071
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +3
Query: 447 RRYALPEGAAPETVESRLSSDGVLTITAPRKVPDAVKGERKVPI 578
R + LP+ +++ SRL DG L I A +++ ER+V I
Sbjct: 161 RHFVLPKDVDMDSLVSRLGKDGKLYIEA-KRILHPTPHERQVNI 203
>SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
Length = 190
Score = 53.2 bits (122), Expect = 2e-07
Identities = 30/92 (32%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Frame = +3
Query: 297 ADKDKFQV-NLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGA 473
A+++K ++ LDV+ + PEEIS K +G++ V + ++F R +ALPEG
Sbjct: 2 ANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRHVNEGPFGFEL-KEFRRTFALPEGV 60
Query: 474 APETVESRLSSDGVLTITAPRKVPDAVKGERK 569
V++R+S+ G L I A + +P GE +
Sbjct: 61 EASNVKTRISNHGQLHIEAMKALPGPDGGEEE 92
Score = 38.3 bits (85), Expect = 0.005
Identities = 24/101 (23%), Positives = 44/101 (43%)
Frame = +3
Query: 276 DLGSSIKADKDKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRY 455
D G DKF + +DV F P+ I V+ ++V Y + F R++
Sbjct: 87 DGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLV-SANHEVEHEGHYHAMHFNRQF 145
Query: 456 ALPEGAAPETVESRLSSDGVLTITAPRKVPDAVKGERKVPI 578
LP +++ +RL +G L A ++ A+ R++ +
Sbjct: 146 VLPREVDMDSLTTRLDKEGKLHFEAKKRNAPALPPVRELKV 186
>SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
Length = 190
Score = 53.2 bits (122), Expect = 2e-07
Identities = 30/92 (32%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Frame = +3
Query: 297 ADKDKFQV-NLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGA 473
A+++K ++ LDV+ + PEEIS K +G++ V + ++F R +ALPEG
Sbjct: 2 ANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRHVNEGPFGFEL-KEFRRTFALPEGV 60
Query: 474 APETVESRLSSDGVLTITAPRKVPDAVKGERK 569
V++R+S+ G L I A + +P GE +
Sbjct: 61 EASNVKTRISNHGQLHIEAMKALPGPDGGEEE 92
Score = 38.3 bits (85), Expect = 0.005
Identities = 24/101 (23%), Positives = 44/101 (43%)
Frame = +3
Query: 276 DLGSSIKADKDKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRY 455
D G DKF + +DV F P+ I V+ ++V Y + F R++
Sbjct: 87 DGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLV-SANHEVEHEGHYHAMHFNRQF 145
Query: 456 ALPEGAAPETVESRLSSDGVLTITAPRKVPDAVKGERKVPI 578
LP +++ +RL +G L A ++ A+ R++ +
Sbjct: 146 VLPREVDMDSLTTRLDKEGKLHFEAKKRNAPALPPVRELKV 186
>SB_21424| Best HMM Match : HSP20 (HMM E-Value=0)
Length = 424
Score = 51.6 bits (118), Expect = 5e-07
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Frame = +3
Query: 297 ADKDKFQV-NLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGA 473
A+++K ++ LDV+ + PEEIS K +G++ V + ++F R + LPEG
Sbjct: 2 ANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRHVNEGPFGFEL-KEFRRTFTLPEGV 60
Query: 474 APETVESRLSSDGVLTITAPRKVPDAVKGERK 569
V++R+S+ G L I A + +P GE +
Sbjct: 61 EASNVKTRISNHGQLHIEAMKALPGPDGGEEE 92
Score = 49.6 bits (113), Expect = 2e-06
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Frame = +3
Query: 306 DKFQV-NLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAAPE 482
D+ ++ LDV+ + PEEIS K +G++ V + ++F R + LPEG
Sbjct: 239 DELEIAKLDVREYRPEEISFKVENGFVKVQGRHVNEGPFGFEL-KEFRRTFTLPEGVEAS 297
Query: 483 TVESRLSSDGVLTITAPRKVPDAVKGERK 569
V++R+S+ G L I A + +P GE +
Sbjct: 298 NVKTRISNHGQLHIEAMKALPGPDGGEEE 326
Score = 38.3 bits (85), Expect = 0.005
Identities = 24/101 (23%), Positives = 44/101 (43%)
Frame = +3
Query: 276 DLGSSIKADKDKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRY 455
D G DKF + +DV F P+ I V+ ++V Y + F R++
Sbjct: 321 DGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLV-SANHEVEHEGHYHAMHFNRQF 379
Query: 456 ALPEGAAPETVESRLSSDGVLTITAPRKVPDAVKGERKVPI 578
LP +++ +RL +G L A ++ A+ R++ +
Sbjct: 380 VLPREVDMDSLTTRLDKEGKLHFEAKKRNAPALPPVRELKV 420
Score = 37.9 bits (84), Expect = 0.006
Identities = 24/101 (23%), Positives = 44/101 (43%)
Frame = +3
Query: 276 DLGSSIKADKDKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRY 455
D G DKF + +DV F P+ I V+ ++V Y + F R++
Sbjct: 87 DGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLV-SANHEVEHEGHYHAMHFNRQF 145
Query: 456 ALPEGAAPETVESRLSSDGVLTITAPRKVPDAVKGERKVPI 578
LP +++ +RL +G L A ++ A+ R++ +
Sbjct: 146 VLPREVDMDSLTTRLDKEGKLHFEAKKRNAPALPPVRELKL 186
>SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 760
Score = 51.6 bits (118), Expect = 5e-07
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Frame = +3
Query: 297 ADKDKFQV-NLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGA 473
A+++K ++ LDV+ + PEEIS K +G++ V + ++F R + LPEG
Sbjct: 2 ANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRHVNEGPFGFEL-KEFRRTFTLPEGV 60
Query: 474 APETVESRLSSDGVLTITAPRKVPDAVKGERK 569
V++R+S+ G L I A + +P GE +
Sbjct: 61 EASNVKTRISNHGQLHIEAMKALPGPDGGEEE 92
Score = 38.3 bits (85), Expect = 0.005
Identities = 24/101 (23%), Positives = 44/101 (43%)
Frame = +3
Query: 276 DLGSSIKADKDKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRY 455
D G DKF + +DV F P+ I V+ ++V Y + F R++
Sbjct: 87 DGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLV-SANHEVEHEGHYHAMHFNRQF 145
Query: 456 ALPEGAAPETVESRLSSDGVLTITAPRKVPDAVKGERKVPI 578
LP +++ +RL +G L A ++ A+ R++ +
Sbjct: 146 VLPREVDMDSLTTRLDKEGKLHFEAKKRNAPALPPVRELKV 186
>SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29)
Length = 189
Score = 51.2 bits (117), Expect = 6e-07
Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Frame = +3
Query: 297 ADKDKFQV-NLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGA 473
A K+ ++ LDV+ + PEEIS K +G + V + ++F R + LPEG
Sbjct: 2 AKKNTLEIAKLDVKEYRPEEISFKVENGVVKVQGRHVNEGEFGFEL-KEFRRTFTLPEGI 60
Query: 474 APETVESRLSSDGVLTITAPRKVP 545
PE V SR+S+ G L I A + +P
Sbjct: 61 DPENVTSRISNHGHLHIEARKALP 84
Score = 43.6 bits (98), Expect = 1e-04
Identities = 26/95 (27%), Positives = 45/95 (47%)
Frame = +3
Query: 294 KADKDKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGA 473
KA +DKF + +DV F PE I V+ ++V Y + F R++ LP
Sbjct: 92 KAKEDKFSMAIDVAGFPPESIKVQVLGNELLV-NANHEVEHEGHYHAMHFNRQFVLPREV 150
Query: 474 APETVESRLSSDGVLTITAPRKVPDAVKGERKVPI 578
+++ +RL +G L A + V A+ R++ +
Sbjct: 151 DMDSLTTRLDKEGKLHFEAKKSVAPALPPVRELMV 185
>SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26)
Length = 695
Score = 48.4 bits (110), Expect = 4e-06
Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Frame = +3
Query: 300 DKDKFQV-NLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAA 476
+++K ++ LDV+ + PEEIS K +G + V + ++F R + LPEG
Sbjct: 4 NENKLEIAKLDVREYRPEEISFKVENGVVKVQGRHVNEGPFGFEL-KEFRRTFTLPEGVE 62
Query: 477 PETVESRLSSDGVLTITAPRKV--PDAVKGERK 569
V++R+S+ G L I A + + PD K E K
Sbjct: 63 ASNVKTRISNHGQLHIEAMKALPEPDGAKKESK 95
Score = 40.3 bits (90), Expect = 0.001
Identities = 24/99 (24%), Positives = 47/99 (47%)
Frame = +3
Query: 282 GSSIKADKDKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYAL 461
G+ ++ DKF + +DV+ F PE I V+ ++V Y + F R++ L
Sbjct: 89 GAKKESKDDKFSMAMDVKGFPPEAIKVQVLGNELLV-SANHEVEHEGHYHAMHFNRQFIL 147
Query: 462 PEGAAPETVESRLSSDGVLTITAPRKVPDAVKGERKVPI 578
P +++ +RL +G L A ++ A+ R++ +
Sbjct: 148 PREVDMDSLTTRLDKEGKLHFEAKKRNAPALPPVRELKV 186
>SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05)
Length = 259
Score = 37.5 bits (83), Expect = 0.008
Identities = 21/67 (31%), Positives = 33/67 (49%)
Frame = +3
Query: 267 ASRDLGSSIKADKDKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFV 446
A+++ S+ D KF + LDV F PEE+ VK G+ + + +RQF
Sbjct: 13 ATKENQSAATKDDTKFTLALDVSDFKPEEVDVKVY-GHELSVRARQECEEHGFFTARQFN 71
Query: 447 RRYALPE 467
R + LP+
Sbjct: 72 RHFVLPQ 78
>SB_47601| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 652
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -3
Query: 272 RCSRELSPWSEVVFGEHWTGDGSQHVVR 189
R SR SP + FG TGDG QH+V+
Sbjct: 100 RASRTPSPSDSIDFGAVETGDGLQHLVK 127
>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1272
Score = 29.5 bits (63), Expect = 2.1
Identities = 24/68 (35%), Positives = 31/68 (45%)
Frame = +1
Query: 382 SWWKASTKRRKTSTGIFQGSSSDVTRCLKARRLRLWNRDCHQTGFSPSPRRGRYPTPSRE 561
S+ K+ K RK S Q SS +R R R + D + +SP PRR +P RE
Sbjct: 605 SYRKSRDKGRKRS----QSRSSSRSRSSSYSRSRSRSPDRRKRSYSPPPRR---RSPFRE 657
Query: 562 SERCPSHR 585
R P R
Sbjct: 658 RRRSPPRR 665
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Frame = +1
Query: 517 SPSPRRGRY---PTPSRESERCPSHRPVP 594
SP PRR R P+P R R PS+ P P
Sbjct: 916 SPPPRRRRKSPSPSPPRRRRRSPSNSPPP 944
>SB_32739| Best HMM Match : PA (HMM E-Value=0.19)
Length = 319
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Frame = +1
Query: 214 PVQCSPKTTSDHGDNSRLHLVTSVP---A*RPTRTSSKSIWTCSTS 342
P+ P++ D R L S P A T T S S+WTCS S
Sbjct: 273 PLDLKPRSNVMRVDEGRYELKLSCPFHCAFSHTLTDSHSLWTCSNS 318
>SB_32465| Best HMM Match : Chromo (HMM E-Value=3.5e-16)
Length = 411
Score = 28.3 bits (60), Expect = 4.9
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = +1
Query: 142 TGPVVLLIKILDWR*PRTTCWLPSPVQCSPKTTSDHGDNSRLHLVTSVPA*RPTRTSS 315
TG + + L+ PR +C P PV SP+ + H VT P PT ++S
Sbjct: 253 TGEIEMKDLTLEIPTPRESCQFPGPVSVSPRVATTHSPPPISPRVT--PEKTPTASTS 308
>SB_17040| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 358
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +3
Query: 522 ITAPRKVPDAVKGERKVPIAQTG 590
+T+ RKVP+ V +RKVP TG
Sbjct: 42 VTSQRKVPNMVTSQRKVPNMVTG 64
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +3
Query: 522 ITAPRKVPDAVKGERKVP 575
+T+ RKVP+ V G RKVP
Sbjct: 52 VTSQRKVPNMVTGRRKVP 69
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +3
Query: 519 TITAPRKVPDAVKGERKVP 575
T+T+ RKVP+ V RKVP
Sbjct: 91 TVTSQRKVPNMVSSRRKVP 109
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +3
Query: 477 PETVESRLSSDGVLTITAPRKVPDAVKGERKVP 575
P TV SR + +T+ RKVP+ V RKVP
Sbjct: 109 PNTVTSRRKVPNM--VTSRRKVPNMVTSRRKVP 139
Score = 27.9 bits (59), Expect = 6.5
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +3
Query: 432 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPRKVPDAVKGERKVP 575
SR+ V P V SR + +T+ R+VP+ V G+RKVP
Sbjct: 204 SRRKVPNMVTSRRKIPNMVTSRRKVPNM--VTSRREVPNMVTGQRKVP 249
Score = 27.5 bits (58), Expect = 8.6
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +3
Query: 477 PETVESRLSSDGVLTITAPRKVPDAVKGERKVP 575
P V SR T+T+ RKVP+ V RKVP
Sbjct: 99 PNMVSSRRKVPN--TVTSRRKVPNMVTSRRKVP 129
>SB_28063| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 1238
Score = 28.3 bits (60), Expect = 4.9
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +2
Query: 485 CGIATVIRRGSHHHRAEE 538
CG++ ++RRG +HH EE
Sbjct: 23 CGVSRILRRGYNHHLNEE 40
>SB_53052| Best HMM Match : U79_P34 (HMM E-Value=2.7)
Length = 1130
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/53 (24%), Positives = 24/53 (45%)
Frame = +1
Query: 295 RPTRTSSKSIWTCSTSRRKRFR*RLPMGTSWWKASTKRRKTSTGIFQGSSSDV 453
RPT + +W + K + + +G S + ST R+ +F G+S +
Sbjct: 534 RPTPLKYRDVWRAAQVESKVWNSKENLGASLMRTSTCVRRCEDSVFGGASDAI 586
>SB_27532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 649
Score = 27.5 bits (58), Expect = 8.6
Identities = 9/34 (26%), Positives = 17/34 (50%)
Frame = -2
Query: 450 VGRTALKYTRARLSSLRACLPPRCTHRQSSPKSL 349
+ +K ++S RAC+ P C H + P ++
Sbjct: 112 ISAAEVKCVHCKVSLCRACIGPHCEHMPTQPHTI 145
>SB_24224| Best HMM Match : Lectin_C (HMM E-Value=0)
Length = 2726
Score = 27.5 bits (58), Expect = 8.6
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = -2
Query: 501 TVAIPQSQAPRLQAARNVGRTALKYTRARLSSLRA 397
T +P QA RL R G +YTR +SSL A
Sbjct: 1773 TAPVPNKQA-RLTIGRQSGNAPYRYTRMYISSLYA 1806
>SB_40478| Best HMM Match : RpoE2 (HMM E-Value=1.9)
Length = 219
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/30 (43%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Frame = +1
Query: 388 WKASTKR-RKTSTGIFQGSSSDVTRCLKAR 474
WK S +R R+T+TGI Q +S+ +T+ L+ +
Sbjct: 35 WKNSVQRARRTATGINQRNSNLITQTLREK 64
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,475,824
Number of Sequences: 59808
Number of extensions: 414205
Number of successful extensions: 1386
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1371
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -