Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10f13f
(595 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g10250.1 68417.m01682 22.0 kDa ER small heat shock protein (H... 38 0.007
At1g53540.1 68414.m06074 17.6 kDa class I small heat shock prote... 35 0.047
At5g59720.1 68418.m07486 18.1 kDa class I heat shock protein (HS... 33 0.11
At3g46230.1 68416.m05004 17.4 kDa class I heat shock protein (HS... 33 0.11
At2g29500.1 68415.m03583 17.6 kDa class I small heat shock prote... 33 0.14
At4g21870.1 68417.m03163 26.5 kDa class P-related heat shock pro... 30 1.0
At4g14830.1 68417.m02280 expressed protein 29 2.3
At1g66720.1 68414.m07584 S-adenosyl-L-methionine:carboxyl methyl... 28 4.1
At1g76770.1 68414.m08934 heat shock protein-related contains sim... 28 5.4
At1g73710.1 68414.m08535 pentatricopeptide (PPR) repeat-containi... 28 5.4
At1g62570.1 68414.m07059 flavin-containing monooxygenase family ... 28 5.4
At5g18190.1 68418.m02135 protein kinase family protein contains ... 27 7.1
At3g56100.1 68416.m06235 leucine-rich repeat transmembrane prote... 27 7.1
At2g28680.1 68415.m03486 cupin family protein similar to legumin... 27 7.1
At3g16857.2 68416.m02153 two-component responsive regulator fami... 27 9.4
At3g16857.1 68416.m02152 two-component responsive regulator fami... 27 9.4
At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical ... 27 9.4
At1g49490.1 68414.m05547 leucine-rich repeat family protein / ex... 27 9.4
At1g26140.1 68414.m03191 hypothetical protein 27 9.4
>At4g10250.1 68417.m01682 22.0 kDa ER small heat shock protein
(HSP22.0-ER) identical to endomembrane-localized small
heat shock protein GI:511795 from [Arabidopsis thaliana]
Length = 195
Score = 37.5 bits (83), Expect = 0.007
Identities = 20/48 (41%), Positives = 31/48 (64%)
Frame = +3
Query: 438 QFVRRYALPEGAAPETVESRLSSDGVLTITAPRKVPDAVKGERKVPIA 581
+F R++ LP+ E+V+++L + GVLTI + P+ VKG R V IA
Sbjct: 132 KFWRQFKLPDNVDMESVKAKLEN-GVLTINLTKLSPEKVKGPRVVNIA 178
>At1g53540.1 68414.m06074 17.6 kDa class I small heat shock protein
(HSP17.6C-CI) (AA 1-156) identical to (17.6 kDa class I
heat shock protein (HSP 17.6) (AA 1-156)(SP:P13853)
(GI:4376161) (Arabidopsis thaliana) (Nucleic Acids Res.
17 (19), 7995 (1989))
Length = 157
Score = 34.7 bits (76), Expect = 0.047
Identities = 18/50 (36%), Positives = 31/50 (62%)
Frame = +3
Query: 432 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPRKVPDAVKGERKVPIA 581
S +F RR+ LPE A E +++ + +GVL++T P KVP+ + + I+
Sbjct: 109 SGKFTRRFRLPENAKMEEIKASM-ENGVLSVTVP-KVPEKKPEVKSIDIS 156
>At5g59720.1 68418.m07486 18.1 kDa class I heat shock protein
(HSP18.1-CI) identical to 18.2 kDa class I heat shock
protein (HSP 18.2) (SP:P19037)[Arabidopsis thaliana];
contains Pfam profile: PF00011 Hsp20/alpha crystallin
family
Length = 161
Score = 33.5 bits (73), Expect = 0.11
Identities = 18/50 (36%), Positives = 30/50 (60%)
Frame = +3
Query: 432 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPRKVPDAVKGERKVPIA 581
S +F+RR+ LPE A E V++ + +GVLT+ P K P+ + + I+
Sbjct: 111 SGKFMRRFRLPENAKMEEVKATM-ENGVLTVVVP-KAPEKKPQVKSIDIS 158
>At3g46230.1 68416.m05004 17.4 kDa class I heat shock protein
(HSP17.4-CI) identical to 17.4 kDa class I heat shock
protein SP:P19036 from [Arabidopsis thaliana]
Length = 156
Score = 33.5 bits (73), Expect = 0.11
Identities = 19/50 (38%), Positives = 32/50 (64%)
Frame = +3
Query: 432 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPRKVPDAVKGERKVPIA 581
S +F+RR+ LPE A E V++ + +GVL++T P KV ++ + V I+
Sbjct: 108 SGKFMRRFRLPENAKVEEVKASM-ENGVLSVTVP-KVQESKPEVKSVDIS 155
>At2g29500.1 68415.m03583 17.6 kDa class I small heat shock protein
(HSP17.6B-CI) contains Pfam PF00011: Hsp20/alpha
crystallin family; identified in Scharf, K-D., et al,
Cell Stress & Chaperones (2001) 6: 225-237.
Length = 153
Score = 33.1 bits (72), Expect = 0.14
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = +3
Query: 432 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPR 536
S QF RR+ LPE + V++ + +GVLT+T P+
Sbjct: 105 SGQFTRRFRLPENVKMDQVKAAM-ENGVLTVTVPK 138
>At4g21870.1 68417.m03163 26.5 kDa class P-related heat shock
protein (HSP26.5-P) contains Pfam profile: PF00011
Hsp20/alpha crystallin family: identified in Scharf,
K-D., et al,Cell Stress & Chaperones (2001) 6: 225-237.
Length = 134
Score = 30.3 bits (65), Expect = 1.0
Identities = 18/79 (22%), Positives = 33/79 (41%)
Frame = +3
Query: 306 DKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAAPET 485
D ++D+ EEI V+ D ++ + F R++ LPE
Sbjct: 35 DSHTFSVDLPGLRKEEIKVEIEDSIYLIIRTEATPMSPPDQPLKTFKRKFRLPESIDMIG 94
Query: 486 VESRLSSDGVLTITAPRKV 542
+ + DGVLT+ P+++
Sbjct: 95 ISAGYE-DGVLTVIVPKRI 112
>At4g14830.1 68417.m02280 expressed protein
Length = 152
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +3
Query: 444 VRRYALPEGAAPETVESRLSSDGVLTITAPR 536
V R+ LPE PE V DG L +T P+
Sbjct: 109 VWRFRLPESTRPELVTVDCDGDGELIVTVPK 139
>At1g66720.1 68414.m07584 S-adenosyl-L-methionine:carboxyl
methyltransferase family protein similar to
defense-related protein cjs1 [Brassica
carinata][GI:14009292][Mol Plant Pathol (2001)
2(3):159-169]
Length = 352
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 442 SSDVTRCLKARRLRLWNRDCHQTGFS 519
+S + + + R LWNRD H TGF+
Sbjct: 151 TSKIPKGISDRNSPLWNRDMHCTGFN 176
>At1g76770.1 68414.m08934 heat shock protein-related contains
similarity to 17.9 kDa heat-shock protein [Helianthus
annuus] gi|11990130|emb|CAB55634
Length = 244
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/37 (29%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = +3
Query: 435 RQFVRRYALPEGAAPETVESRLSS-DGVLTITAPRKV 542
++F + + +P+ + +++R + DG LT+T P+KV
Sbjct: 93 KEFKKVFRIPDIVILDKIKARFNEEDGTLTVTMPKKV 129
>At1g73710.1 68414.m08535 pentatricopeptide (PPR) repeat-containing
protein low similarity to fertility restorer [Petunia x
hybrida] GI:22128587, post-transcriptional control of
chloroplast gene expression CRP1 [Zea mays] GI:3289002;
contains Pfam profile PF01535: PPR repeat
Length = 991
Score = 27.9 bits (59), Expect = 5.4
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -3
Query: 587 GLCDGHLSLSLDGVGYLPRRGDGENPV 507
G C G + L LD + P+ G ++PV
Sbjct: 240 GWCAGKVDLDLDSIDDFPKNGSAQSPV 266
>At1g62570.1 68414.m07059 flavin-containing monooxygenase family
protein / FMO family protein low similarity to
flavin-containing monooxygenase FMO3 [Rattus norvegicus]
GI:12006730; contains Pfam profile PF00743:
Flavin-binding monooxygenase-like
Length = 461
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +1
Query: 493 RDCHQTGFSPSPRRGRYPTPSRESERCPSHRPV 591
R+C G+ P R PSR+S R PSHR V
Sbjct: 83 REC--MGYKDFPFVPRGDDPSRDSRRYPSHREV 113
>At5g18190.1 68418.m02135 protein kinase family protein contains
Pfam domains, PF00069: Protein kinase domain
Length = 691
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +2
Query: 242 QTMETTRGCIS*PRFQHKGRQG 307
Q T GC P HKGRQG
Sbjct: 185 QVYNTLNGCYGVPAVHHKGRQG 206
>At3g56100.1 68416.m06235 leucine-rich repeat transmembrane protein
kinase, putative hypothetical proteins - Arabidopsis
thaliana
Length = 719
Score = 27.5 bits (58), Expect = 7.1
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +1
Query: 511 GFSPSPRRGRYPTPSRESERCPSHR 585
G+S S P+PS E ER PSHR
Sbjct: 342 GYSVSTPCPTLPSPSPEKERKPSHR 366
>At2g28680.1 68415.m03486 cupin family protein similar to legumin
(11S-globulin) from Ginkgo biloba [GI:949869], 11S
globulin from Avena sativa [GI:472867]; contains a 11-S
plant seed storage protein signature (PS00305)
Length = 356
Score = 27.5 bits (58), Expect = 7.1
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +3
Query: 432 SRQFV-RRYALPEGAAPETVESRLSSDGVLTITAPRKVPDAVKGERK 569
S +FV R + L E + V S+ + +G++ + A K+P+ KG+RK
Sbjct: 141 STEFVGRAWDLDETTVKKLVGSQ-TGNGIVKVDASLKMPEPKKGDRK 186
>At3g16857.2 68416.m02153 two-component responsive regulator family
protein / response regulator family protein contains
Pfam profile: PF00072 response regulator receiver
domain; similar to ARR1 protein GB:BAA74528 from
[Arabidopsis thaliana] (Plant Cell Physiol. (1998) 39
(11), 1232-1239)
Length = 690
Score = 27.1 bits (57), Expect = 9.4
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +1
Query: 388 WKASTKRRKTSTGIFQGSSSDVTRC-LKARRLRLWNRDCHQ 507
W++S+++RK G QG D LK R+ +W+ + HQ
Sbjct: 209 WRSSSRKRKDEEGEEQGDDKDEDASNLKKPRV-VWSVELHQ 248
>At3g16857.1 68416.m02152 two-component responsive regulator family
protein / response regulator family protein contains
Pfam profile: PF00072 response regulator receiver
domain; similar to ARR1 protein GB:BAA74528 from
[Arabidopsis thaliana] (Plant Cell Physiol. (1998) 39
(11), 1232-1239)
Length = 669
Score = 27.1 bits (57), Expect = 9.4
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +1
Query: 388 WKASTKRRKTSTGIFQGSSSDVTRC-LKARRLRLWNRDCHQ 507
W++S+++RK G QG D LK R+ +W+ + HQ
Sbjct: 209 WRSSSRKRKDEEGEEQGDDKDEDASNLKKPRV-VWSVELHQ 248
>At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical to
XRN3 [Arabidopsis thaliana] gi|11875628|gb|AAG40732
Length = 1020
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +2
Query: 512 GSHHHRAEEGTRRRQGRAKGAH 577
G HHH+ + G R+GR +G+H
Sbjct: 987 GQHHHQ-QGGDHDRRGRGRGSH 1007
>At1g49490.1 68414.m05547 leucine-rich repeat family protein /
extensin family protein contains similarity to disease
resistance protein GI:3894383 from [Lycopersicon
esculentum]; contains leucine-rich repeats,
Pfam:PF00560; contains proline rich extensin domains,
INTERPRO:IPR002965
Length = 847
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +1
Query: 523 SPRRGRYPTPSRESERCPSHRPVP 594
S + PTPS ES + PS P P
Sbjct: 731 SSETSQVPTPSSESNQSPSQAPTP 754
>At1g26140.1 68414.m03191 hypothetical protein
Length = 162
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -3
Query: 269 CSRELSPWSEVVFGEHWTGDG 207
C + L P E V EHW+G+G
Sbjct: 94 CGKTLQPTMEDVKEEHWSGNG 114
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,374,405
Number of Sequences: 28952
Number of extensions: 281682
Number of successful extensions: 968
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 968
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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