Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10f12r
         (790 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory recept...    25   0.52 
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    22   4.9  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     22   6.4  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    22   6.4  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    22   6.4  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   6.4  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           22   6.4  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    22   6.4  

>AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory receptor
           candidate 9 protein.
          Length = 408

 Score = 25.4 bits (53), Expect = 0.52
 Identities = 9/30 (30%), Positives = 20/30 (66%)
 Frame = +1

Query: 244 LTF*IYQSFI*YKTTSMSTVKYYILINNIL 333
           + F +++SF  +K T++ TV Y+I +  ++
Sbjct: 300 IIFQVFESFYLHKATTLETVYYFISLGLLI 329


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +2

Query: 386 TTPSEASPPTSETLHTLRDQS 448
           TTP   SPP  E L   +D S
Sbjct: 96  TTPPTPSPPPEERLTPSKDAS 116


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = +3

Query: 87  STTYRYGNKYYLSCKDNMNKTIYHEV 164
           S  Y YGN Y+     +    I+H++
Sbjct: 76  SNGYGYGNYYHPQLHSHHGPPIHHQI 101


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = +3

Query: 87  STTYRYGNKYYLSCKDNMNKTIYHEV 164
           S  Y YGN Y+     +    I+H++
Sbjct: 76  SNGYGYGNYYHPQLHSHHGPPIHHQI 101


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 500 DPLANCKLKPLAAVDQTFLVLDDP 571
           D + NCKLK      +  L+ D+P
Sbjct: 92  DSVKNCKLKNKERKVKPLLITDEP 115


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 99  RYGNKYYLSCKDNM 140
           R G  Y+LSC +NM
Sbjct: 579 RSGLSYHLSCAENM 592


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = +3

Query: 87  STTYRYGNKYYLSCKDNMNKTIYHEV 164
           S  Y YGN Y+     +    I+H++
Sbjct: 76  SNGYGYGNYYHPQLHSHHGPPIHHQI 101


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = +3

Query: 87  STTYRYGNKYYLSCKDNMNKTIYHEV 164
           S  Y YGN Y+     +    I+H++
Sbjct: 76  SNGYGYGNYYHPQLHSHHGPPIHHQI 101


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,707
Number of Sequences: 336
Number of extensions: 2913
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21376414
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)