Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10f12r
         (790 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam...    27   3.1  
SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces p...    25   9.4  
SPAC26F1.05 |mug106||sequence orphan|Schizosaccharomyces pombe|c...    25   9.4  

>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 17/66 (25%), Positives = 34/66 (51%)
 Frame = +1

Query: 259 YQSFI*YKTTSMSTVKYYILINNILRPILFRSLKFLHIFSSFNDTI*S*SADIGNTAYFT 438
           ++  + +K+  ++  K ++ +   LRP++    KF++++      I S  A IG T + T
Sbjct: 326 HEQILQWKSDFLNVSKDHLKVLQQLRPLIDIVEKFMNVYFKGLSNIISSFAFIGFTLFAT 385

Query: 439 RSITFF 456
            S  FF
Sbjct: 386 LSSLFF 391


>SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 571

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 359 NFYTFFQVLTTPSEASPPTSETLHTL 436
           N+++ F    TP+ ASPP S   HTL
Sbjct: 491 NWFSSFSY-QTPNSASPPFSSLSHTL 515


>SPAC26F1.05 |mug106||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 115

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 379 LKKCVKILVT*TKLALKYCLLIYN 308
           LKKC  +LV  + L  +Y +L YN
Sbjct: 13  LKKCATLLVQLSLLRYRYMVLAYN 36


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,391,757
Number of Sequences: 5004
Number of extensions: 44817
Number of successful extensions: 116
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)