Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10f12r
         (790 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0511 - 3706123-3706166,3706436-3706492,3706734-3706818,370...    29   4.2  

>02_01_0511 -
           3706123-3706166,3706436-3706492,3706734-3706818,
           3707424-3707472,3707566-3707639,3707775-3707849,
           3708186-3708240,3708318-3708391,3708607-3708753,
           3709419-3709493,3709527-3709648,3709749-3709929
          Length = 345

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +2

Query: 362 FYTFFQVLTTPSEASPPTSETLHTLRDQSLFFLINAKSKNH*QEI 496
           F +FF   ++PS +SP  S     LR+  L  L  A  KN   E+
Sbjct: 19  FLSFFPASSSPSRSSPLLSAADLLLREPELLLLPRAAGKNQQAEL 63


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,588,692
Number of Sequences: 37544
Number of extensions: 224251
Number of successful extensions: 354
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 354
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)