Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10f12r
         (790 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4172| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.26 
SB_58889| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  

>SB_4172| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 90

 Score = 33.1 bits (72), Expect = 0.26
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = +2

Query: 365 YTFFQVLTTPSEASPPTSETLHTLRDQSLFFLINAKS 475
           Y F +V+T+P +A+PP SE   T+R     F  +AK+
Sbjct: 49  YCFVEVMTSPPQATPPHSENNKTVRHLGRHFTGHAKN 85


>SB_58889| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 156

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +2

Query: 365 YTFFQVLTTPSEASPPTSETL 427
           Y F +V+T+P +A+PPT  T+
Sbjct: 36  YCFIEVMTSPPQATPPTVRTI 56


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,638,046
Number of Sequences: 59808
Number of extensions: 280198
Number of successful extensions: 473
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2167838629
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)