Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10f12r
         (790 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41538-6|AAG00007.2|  575|Caenorhabditis elegans Intermediate fi...    30   1.6  
U58746-3|AAB00623.1|  188|Caenorhabditis elegans Hypothetical pr...    29   2.9  

>U41538-6|AAG00007.2|  575|Caenorhabditis elegans Intermediate
           filament, d protein1, isoform a protein.
          Length = 575

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 9/25 (36%), Positives = 19/25 (76%)
 Frame = +3

Query: 87  STTYRYGNKYYLSCKDNMNKTIYHE 161
           ++++ YG+ Y L+ +D  NKT++H+
Sbjct: 424 TSSHHYGSSYSLNVRDTHNKTVHHD 448


>U58746-3|AAB00623.1|  188|Caenorhabditis elegans Hypothetical
           protein R05G6.5 protein.
          Length = 188

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +3

Query: 246 NILNLPVFYIIQNYVYEYSEILYINKQYFKANFV*VTKIFTHF 374
           N+++  +  I+ NY YEY  +L   K   K NF  + K   HF
Sbjct: 15  NLVDRIIVIILPNYFYEYESVL---KHITKENFGIIEKTVKHF 54


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,063,764
Number of Sequences: 27780
Number of extensions: 245189
Number of successful extensions: 543
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)