Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10f12r
(790 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ325087-1|ABD14101.1| 179|Apis mellifera complementary sex det... 23 2.4
DQ325086-1|ABD14100.1| 179|Apis mellifera complementary sex det... 23 2.4
DQ325085-1|ABD14099.1| 179|Apis mellifera complementary sex det... 23 2.4
DQ325084-1|ABD14098.1| 179|Apis mellifera complementary sex det... 23 2.4
AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice... 23 2.4
DQ325133-1|ABD14147.1| 181|Apis mellifera complementary sex det... 23 3.2
DQ325075-1|ABD14089.1| 181|Apis mellifera complementary sex det... 23 3.2
DQ325074-1|ABD14088.1| 181|Apis mellifera complementary sex det... 23 3.2
DQ325073-1|ABD14087.1| 181|Apis mellifera complementary sex det... 23 3.2
DQ325072-1|ABD14086.1| 181|Apis mellifera complementary sex det... 23 3.2
DQ325071-1|ABD14085.1| 181|Apis mellifera complementary sex det... 23 3.2
DQ325070-1|ABD14084.1| 181|Apis mellifera complementary sex det... 23 3.2
DQ325069-1|ABD14083.1| 181|Apis mellifera complementary sex det... 23 3.2
DQ325068-1|ABD14082.1| 181|Apis mellifera complementary sex det... 23 3.2
AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex det... 23 3.2
AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex det... 23 3.2
DQ257416-1|ABB81847.1| 552|Apis mellifera yellow-h protein. 21 9.9
AY739659-1|AAU85298.1| 288|Apis mellifera hyperpolarization-act... 21 9.9
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 21 9.9
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 21 9.9
>DQ325087-1|ABD14101.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 23.4 bits (48), Expect = 2.4
Identities = 8/22 (36%), Positives = 12/22 (54%)
Frame = +3
Query: 282 NYVYEYSEILYINKQYFKANFV 347
NY Y Y+ Y K Y+ N++
Sbjct: 94 NYKYNYNNNNYNKKLYYNINYI 115
>DQ325086-1|ABD14100.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 23.4 bits (48), Expect = 2.4
Identities = 8/22 (36%), Positives = 12/22 (54%)
Frame = +3
Query: 282 NYVYEYSEILYINKQYFKANFV 347
NY Y Y+ Y K Y+ N++
Sbjct: 94 NYKYNYNNNNYNKKLYYNINYI 115
>DQ325085-1|ABD14099.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 23.4 bits (48), Expect = 2.4
Identities = 8/22 (36%), Positives = 12/22 (54%)
Frame = +3
Query: 282 NYVYEYSEILYINKQYFKANFV 347
NY Y Y+ Y K Y+ N++
Sbjct: 94 NYKYNYNNNNYNKKLYYNINYI 115
>DQ325084-1|ABD14098.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 23.4 bits (48), Expect = 2.4
Identities = 8/22 (36%), Positives = 12/22 (54%)
Frame = +3
Query: 282 NYVYEYSEILYINKQYFKANFV 347
NY Y Y+ Y K Y+ N++
Sbjct: 94 NYKYNYNNNNYNKKLYYNINYI 115
>AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice
variant B protein.
Length = 810
Score = 23.4 bits (48), Expect = 2.4
Identities = 9/24 (37%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Frame = -1
Query: 568 IVKNKECLINSSQWFQFT-VS*WI 500
++KN E + S WF ++ VS W+
Sbjct: 486 VLKNTEIFKDKSDWFDYSEVSKWV 509
>DQ325133-1|ABD14147.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.0 bits (47), Expect = 3.2
Identities = 10/24 (41%), Positives = 11/24 (45%)
Frame = +3
Query: 87 STTYRYGNKYYLSCKDNMNKTIYH 158
S Y Y N Y K N NK Y+
Sbjct: 89 SNNYNYNNNYNNYNKHNYNKLYYN 112
>DQ325075-1|ABD14089.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.0 bits (47), Expect = 3.2
Identities = 10/24 (41%), Positives = 11/24 (45%)
Frame = +3
Query: 87 STTYRYGNKYYLSCKDNMNKTIYH 158
S Y Y N Y K N NK Y+
Sbjct: 89 SNNYNYNNNYNNYNKHNYNKLYYN 112
>DQ325074-1|ABD14088.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.0 bits (47), Expect = 3.2
Identities = 10/24 (41%), Positives = 11/24 (45%)
Frame = +3
Query: 87 STTYRYGNKYYLSCKDNMNKTIYH 158
S Y Y N Y K N NK Y+
Sbjct: 89 SNNYNYNNNYNNYNKHNYNKLYYN 112
>DQ325073-1|ABD14087.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.0 bits (47), Expect = 3.2
Identities = 10/24 (41%), Positives = 11/24 (45%)
Frame = +3
Query: 87 STTYRYGNKYYLSCKDNMNKTIYH 158
S Y Y N Y K N NK Y+
Sbjct: 89 SNNYNYNNNYNNYNKHNYNKLYYN 112
>DQ325072-1|ABD14086.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.0 bits (47), Expect = 3.2
Identities = 10/24 (41%), Positives = 11/24 (45%)
Frame = +3
Query: 87 STTYRYGNKYYLSCKDNMNKTIYH 158
S Y Y N Y K N NK Y+
Sbjct: 89 SNNYNYNNNYNNYNKHNYNKLYYN 112
>DQ325071-1|ABD14085.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.0 bits (47), Expect = 3.2
Identities = 10/24 (41%), Positives = 11/24 (45%)
Frame = +3
Query: 87 STTYRYGNKYYLSCKDNMNKTIYH 158
S Y Y N Y K N NK Y+
Sbjct: 89 SNNYNYNNNYNNYNKHNYNKLYYN 112
>DQ325070-1|ABD14084.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.0 bits (47), Expect = 3.2
Identities = 10/24 (41%), Positives = 11/24 (45%)
Frame = +3
Query: 87 STTYRYGNKYYLSCKDNMNKTIYH 158
S Y Y N Y K N NK Y+
Sbjct: 89 SNNYNYNNNYNNYNKHNYNKLYYN 112
>DQ325069-1|ABD14083.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.0 bits (47), Expect = 3.2
Identities = 10/24 (41%), Positives = 11/24 (45%)
Frame = +3
Query: 87 STTYRYGNKYYLSCKDNMNKTIYH 158
S Y Y N Y K N NK Y+
Sbjct: 89 SNNYNYNNNYNNYNKHNYNKLYYN 112
>DQ325068-1|ABD14082.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.0 bits (47), Expect = 3.2
Identities = 10/24 (41%), Positives = 11/24 (45%)
Frame = +3
Query: 87 STTYRYGNKYYLSCKDNMNKTIYH 158
S Y Y N Y K N NK Y+
Sbjct: 89 SNNYNYNNNYNNYNKHNYNKLYYN 112
>AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 23.0 bits (47), Expect = 3.2
Identities = 10/24 (41%), Positives = 11/24 (45%)
Frame = +3
Query: 87 STTYRYGNKYYLSCKDNMNKTIYH 158
S Y Y N Y K N NK Y+
Sbjct: 322 SNNYNYNNNYNNYNKHNYNKLYYN 345
>AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 23.0 bits (47), Expect = 3.2
Identities = 10/24 (41%), Positives = 11/24 (45%)
Frame = +3
Query: 87 STTYRYGNKYYLSCKDNMNKTIYH 158
S Y Y N Y K N NK Y+
Sbjct: 322 SNNYNYNNNYNNYNKHNYNKLYYN 345
>DQ257416-1|ABB81847.1| 552|Apis mellifera yellow-h protein.
Length = 552
Score = 21.4 bits (43), Expect = 9.9
Identities = 9/32 (28%), Positives = 16/32 (50%)
Frame = +3
Query: 63 C*TVLKFTSTTYRYGNKYYLSCKDNMNKTIYH 158
C + + + S +RYG Y KD+ + +H
Sbjct: 320 CGSAIAYVSDVFRYGLLIYDFFKDSSFRIQHH 351
>AY739659-1|AAU85298.1| 288|Apis mellifera
hyperpolarization-activated ion channelvariant T
protein.
Length = 288
Score = 21.4 bits (43), Expect = 9.9
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = +3
Query: 225 YFFMTLTNILNLPVFYIIQNYVYEYSEILYI 317
+FF+ L + + L ++I N ++SE I
Sbjct: 168 WFFLDLISSIPLDYIFLIFNQFQDFSESFQI 198
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 21.4 bits (43), Expect = 9.9
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = +3
Query: 225 YFFMTLTNILNLPVFYIIQNYVYEYSEILYI 317
+FF+ L + + L ++I N ++SE I
Sbjct: 168 WFFLDLISSIPLDYIFLIFNQFQDFSESFQI 198
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 21.4 bits (43), Expect = 9.9
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = +3
Query: 225 YFFMTLTNILNLPVFYIIQNYVYEYSEILYI 317
+FF+ L + + L ++I N ++SE I
Sbjct: 168 WFFLDLISSIPLDYIFLIFNQFQDFSESFQI 198
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,497
Number of Sequences: 438
Number of extensions: 3046
Number of successful extensions: 22
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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