Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10f12f
         (540 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-3144|AAM70856.1|  980|Drosophila melanogaster CG30389-P...    32   0.44 
AE013599-3143|AAF46685.2|  980|Drosophila melanogaster CG30389-P...    32   0.44 

>AE013599-3144|AAM70856.1|  980|Drosophila melanogaster CG30389-PC,
           isoform C protein.
          Length = 980

 Score = 32.3 bits (70), Expect = 0.44
 Identities = 11/49 (22%), Positives = 27/49 (55%)
 Frame = -3

Query: 202 DLLAVEVAVVHQILFDCRSYSWLAFAFYAQGLSCFDIVIFTLIFIHVQL 56
           DL+ +    VH +LF   +Y W+ + ++     C   +I  ++F+++++
Sbjct: 89  DLVCLFFIPVHWLLFAASTYVWVQYVWHTDKGICLPTIILWMLFVYLEV 137


>AE013599-3143|AAF46685.2|  980|Drosophila melanogaster CG30389-PA,
           isoform A protein.
          Length = 980

 Score = 32.3 bits (70), Expect = 0.44
 Identities = 11/49 (22%), Positives = 27/49 (55%)
 Frame = -3

Query: 202 DLLAVEVAVVHQILFDCRSYSWLAFAFYAQGLSCFDIVIFTLIFIHVQL 56
           DL+ +    VH +LF   +Y W+ + ++     C   +I  ++F+++++
Sbjct: 89  DLVCLFFIPVHWLLFAASTYVWVQYVWHTDKGICLPTIILWMLFVYLEV 137


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,629,016
Number of Sequences: 53049
Number of extensions: 171295
Number of successful extensions: 408
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 2053700352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)