Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10f10r
         (579 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0302 + 15546969-15547511,15549514-15549750,15550046-155501...    29   3.5  
01_06_0861 - 32528419-32529102                                         28   4.7  
01_02_0089 - 10997882-10997957,10998139-10998423,10998519-109985...    28   6.2  
02_03_0279 + 17250347-17252098                                         27   8.2  

>08_02_0302 +
           15546969-15547511,15549514-15549750,15550046-15550188,
           15550616-15550706,15550791-15550931
          Length = 384

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +1

Query: 370 ELAYLVCIALDRRAKNESTRSTSEHPRVEEPQAGQQQHQD 489
           +L  +  + LD  +K E   ST  H R  +P+A +Q+ +D
Sbjct: 303 DLENIKSMILDHLSKIEHVPSTQFHDRPSDPEAPEQEEED 342


>01_06_0861 - 32528419-32529102
          Length = 227

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = -3

Query: 484 GAAAGQPVAPLLGDVLRCFSSTHSSPYDLMRCRQDKPTR 368
           GAAAG  V  LL  +   FSSTH++  +L+R     P R
Sbjct: 110 GAAAGA-VVELLAPLPASFSSTHAAAAELLRVDGSFPRR 147


>01_02_0089 -
           10997882-10997957,10998139-10998423,10998519-10998589,
           10998685-10998761,10998858-10998963,10999062-10999189,
           10999291-10999423,11000005-11000133,11000220-11000375,
           11000770-11000846,11000938-11000998,11001249-11001383,
           11001642-11001765,11001852-11001917,11002010-11002112,
           11002603-11002652,11003795-11003895
          Length = 625

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +2

Query: 119 PARXLXHILFACCVHCCLLFFIADRLRTNIQCCQPFKLFKCS 244
           PA  L  +L  CC  CC +  + ++L   I CC   K  KCS
Sbjct: 5   PAHALL-VLLLCC-SCCSVRHLLEQLARRIPCCWDAK--KCS 42


>02_03_0279 + 17250347-17252098
          Length = 583

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -3

Query: 556 SEGSRERHHA*PRDHQPHRHLLHPGAAAGQPVA 458
           S GS  RHH   + H  H H++   AA+    A
Sbjct: 362 SHGSNHRHHYHYQYHHHHHHIIASSAASSAATA 394


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,679,369
Number of Sequences: 37544
Number of extensions: 223165
Number of successful extensions: 575
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)