Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10f10r
         (579 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067607-3|AAF98607.1|  590|Caenorhabditis elegans Hypothetical ...    32   0.26 
AC006714-6|AAN84810.2|  339|Caenorhabditis elegans Hypothetical ...    29   2.4  
AL132847-4|CAB63373.3|  965|Caenorhabditis elegans Hypothetical ...    28   5.5  
AC024763-7|AAF60517.1|  304|Caenorhabditis elegans Pdgf/vegf gro...    27   9.6  

>AF067607-3|AAF98607.1|  590|Caenorhabditis elegans Hypothetical
           protein C18H7.6 protein.
          Length = 590

 Score = 32.3 bits (70), Expect = 0.26
 Identities = 16/61 (26%), Positives = 27/61 (44%)
 Frame = +1

Query: 325 FFLVRLIRHPRMISFELAYLVCIALDRRAKNESTRSTSEHPRVEEPQAGQQQHQDAVGGD 504
           FFL + +   R  S  + +LVC +   +  +      + HP+  EP    + H+D   G 
Sbjct: 517 FFLFKSLLRSRK-SKRICFLVCCSSGDQVGSAENVDMNGHPKTNEPSEKHEDHEDEENGK 575

Query: 505 E 507
           E
Sbjct: 576 E 576


>AC006714-6|AAN84810.2|  339|Caenorhabditis elegans Hypothetical
           protein Y119D3B.12a protein.
          Length = 339

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = -3

Query: 568 DRLRSEGSRERHHA*PRDHQPHRHLLHPG 482
           DR RS       H   RDH+ HRH  H G
Sbjct: 273 DRKRSTEQHHHSHRSSRDHRDHRHRDHRG 301


>AL132847-4|CAB63373.3|  965|Caenorhabditis elegans Hypothetical
           protein Y48G10A.4 protein.
          Length = 965

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 325 FFLVRLIRHPRMISFELAYLVCI 393
           F L  LIR  R++ F LAY VC+
Sbjct: 713 FHLFSLIRDQRVVDFLLAYAVCL 735


>AC024763-7|AAF60517.1|  304|Caenorhabditis elegans Pdgf/vegf growth
           factor relatedprotein 1 protein.
          Length = 304

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -3

Query: 571 CDRLRSEGSRERHHA*PRDHQPHRH 497
           CD +R    R +HH  PR H  HRH
Sbjct: 259 CDCVR----RRQHHGGPRGHHGHRH 279


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,908,441
Number of Sequences: 27780
Number of extensions: 195048
Number of successful extensions: 530
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)