Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10f10r
         (579 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   0.71 
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    24   0.94 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   1.6  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.2  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    23   2.9  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   2.9  
DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.              21   8.8  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   8.8  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 24.6 bits (51), Expect = 0.71
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -3

Query: 280 HLSYL*VSFVQSRAFK*LEWLTALDIRTQTI 188
           +LSY  ++ + +R FK L +L  LD+R  +I
Sbjct: 341 NLSYNMLTHIDARMFKDLFFLQILDLRNNSI 371



 Score = 21.8 bits (44), Expect = 5.0
 Identities = 8/28 (28%), Positives = 11/28 (39%)
 Frame = -3

Query: 433 CFSSTHSSPYDLMRCRQDKPTRRRSYED 350
           CF+  H   +D   C    P   + Y D
Sbjct: 743 CFALCHCCDFDACDCEMTCPAGCKCYND 770


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 24.2 bits (50), Expect = 0.94
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 457 PLLGDVLRCFSSTHSSPYDLMRCR 386
           P +  V +C +   S PYD  RCR
Sbjct: 161 PSVKHVAKCATDFSSWPYDTHRCR 184


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = +1

Query: 403  RRAKNESTRSTSEHPRVEEPQAGQQQHQ 486
            ++ + +  +  S+ P+ ++PQ  QQQ Q
Sbjct: 1510 QQQQQQQPQQQSQQPQQQQPQPQQQQQQ 1537


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = +1

Query: 391 IALDRRAKNESTRSTSEHPRVEEPQAGQQQHQDAVGG 501
           + +D + +N    ++ + P  +EP A  +  +D+VGG
Sbjct: 140 LQVDTQGENAVKVNSVQVPTDDEPYASFKAMEDSVGG 176


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
 Frame = -3

Query: 502 RHLLHPGAAA-GQPVAPLLGDVLRCFSS 422
           RHLL       G P  PL+G+ L  F S
Sbjct: 35  RHLLELAEKIPGPPALPLIGNALDLFGS 62


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 5/11 (45%), Positives = 8/11 (72%)
 Frame = +2

Query: 137 HILFACCVHCC 169
           H++ +CC  CC
Sbjct: 6   HVVMSCCCWCC 16


>DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +2

Query: 227 KLFKCSGLYKT 259
           KL KC G YKT
Sbjct: 118 KLLKCIGKYKT 128


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -3

Query: 508 PHRHLLHPGAAAGQP 464
           PH+H  H GAA   P
Sbjct: 21  PHQHQQHYGAAVQVP 35


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,900
Number of Sequences: 438
Number of extensions: 2306
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)