Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10f10r
         (579 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g24920.1 68418.m02951 expressed protein ; expression supporte...    28   3.9  
At1g74720.1 68414.m08658 C2 domain-containing protein contains I...    27   9.0  

>At5g24920.1 68418.m02951 expressed protein ; expression supported
           by MPSS
          Length = 147

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +1

Query: 349 HPRMISFELAYLVCIALDRRAKNESTRSTSEHPRVEEPQAGQQQHQD 489
           +P  ++  +A  +C+      K E     S+H ++EE   GQ Q  D
Sbjct: 77  NPTFLATPVAAKICLDCVNMEKKEGQNGESKHSKLEEHIFGQDQGSD 123


>At1g74720.1 68414.m08658 C2 domain-containing protein contains
           INTERPRO:IPR000008 C2 domain
          Length = 1081

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -3

Query: 523 PRDHQPHRHLLHPGAAAGQPVAPLLGDV 440
           P D+ PHR+  HP      P  P  G+V
Sbjct: 245 PNDNHPHRNDNHPQRPPSPPPPPSAGEV 272


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,083,064
Number of Sequences: 28952
Number of extensions: 172231
Number of successful extensions: 376
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 373
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1131744440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)