Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10f10f
         (614 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    27   0.17 
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    24   1.2  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    23   1.5  
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    22   3.6  
AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    22   3.6  
AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory recept...    22   3.6  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    22   4.7  
AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    22   4.7  

>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 26.6 bits (56), Expect = 0.17
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
 Frame = -3

Query: 318 LINNLS--ANITVS*RYCLYFFDFFLVRLIRHPRMISFELAYLVCIALDRRAKNESTRST 145
           L+ NL   A I  + RYC Y++ FF V L          + Y +C+  ++   +   R T
Sbjct: 97  LLKNLESCAKIKKTKRYCYYYYAFFGVHL-----AYGVVIIYSICVQTEKSVFDFLCRHT 151

Query: 144 SEH 136
            E+
Sbjct: 152 VEY 154


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 10/37 (27%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
 Frame = -1

Query: 425 CVHCCLLFFIADRLRTNIQCC---QPFKLFKCSGLYK 324
           C HC + F  +++L+ ++      +PF+  KC G ++
Sbjct: 221 CEHCSMKFSDSNQLKAHVLIHTNEKPFECDKCRGRFR 257


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 8/41 (19%), Positives = 19/41 (46%)
 Frame = -2

Query: 502 CLSHFLMLQFNWNAQHVNYVTFYLHVVYIAVYCFSLPIVCV 380
           CL +F +        +  Y  F +  +++  YC  + ++C+
Sbjct: 198 CLDYFTLHLLFLPCIYYFYSAFIIFTIHLLFYCVLIILLCI 238



 Score = 21.4 bits (43), Expect = 6.2
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 441 HFICMLCTLLFIVFHCRS 388
           +F C L  LL I + CR+
Sbjct: 287 YFYCALIILLCIYYFCRA 304


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 445 VTFYLHVVYIAVYCFS 398
           VTF + VVY+   C+S
Sbjct: 567 VTFVIDVVYVCDVCYS 582


>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = +1

Query: 520 FIIKWTLLLLLNIFEIIYSC 579
           F ++W  L +L I  + Y C
Sbjct: 269 FTLQWAFLQILEILALAYLC 288


>AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory receptor
           candidate 24 protein.
          Length = 384

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 445 VTFYLHVVYIAVYCFS 398
           VTF + VVY+   C+S
Sbjct: 292 VTFVIDVVYVCDVCYS 307


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 12/48 (25%), Positives = 23/48 (47%)
 Frame = -1

Query: 173 GRRMSRREAPQNIPE*RSHRLASSSTRMQ*VAMRLVVSWLGMVAFAGA 30
           GR  ++ +A     E +   LAS   ++   A + +  WLG  ++ G+
Sbjct: 501 GRVGNKGKATSFFDEDQDRNLASDLAKILSQAKQEIPEWLGSKSYGGS 548


>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -1

Query: 173 GRRMSRREAPQNIPE*RSHRLASSSTRMQ 87
           G+  SRR+APQ+  + +  R+ ++    Q
Sbjct: 79  GKHKSRRKAPQSFEDIQHQRVMANVRERQ 107


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,747
Number of Sequences: 336
Number of extensions: 2860
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15666150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)