Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10f10f
         (614 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41987| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.42 
SB_34529| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_25304| Best HMM Match : HDV_ag (HMM E-Value=0.55)                   28   6.9  
SB_47158| Best HMM Match : pKID (HMM E-Value=0.22)                     27   9.1  

>SB_41987| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 125

 Score = 31.9 bits (69), Expect = 0.42
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +3

Query: 138 VLRCFSSTHSSPYDLMRCRQDKPTRRRSYEDGGLNEPKKNQKNTNN 275
           VL CF+    S Y + +C Q+KPT     +D    E +++  N N+
Sbjct: 70  VLACFAEYFPSKYRVTKCSQEKPTNNEENKD---EEQERDAGNNNS 112


>SB_34529| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 312

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 195 QDKPTRRRSYEDGGLNEPKKNQKNTNNISKK 287
           + +P RRR+  D  ++  K NQKN N + KK
Sbjct: 200 EKEPRRRRARHDTDMSRIKTNQKNRNAVIKK 230


>SB_25304| Best HMM Match : HDV_ag (HMM E-Value=0.55)
          Length = 2153

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
 Frame = +3

Query: 126  LLG-DVLRCFSSTHS--SPYDLMRCRQDKPTRRRSYEDGGLNEPKKNQKNTNNISKK 287
            L+G D + C S  H+  +P  L    Q   TRR   E+ G N+P+   K     S+K
Sbjct: 1288 LMGTDEIICQSLEHAGKTPPALSSISQQLDTRREIQENSGTNQPQTTDKPKETRSQK 1344


>SB_47158| Best HMM Match : pKID (HMM E-Value=0.22)
          Length = 309

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 18/65 (27%), Positives = 32/65 (49%)
 Frame = +3

Query: 96  GAAAGQPVAPLLGDVLRCFSSTHSSPYDLMRCRQDKPTRRRSYEDGGLNEPKKNQKNTNN 275
           GA AG PV+   G  L   SST   P+  + C +D P +  + +    +     +K+++ 
Sbjct: 206 GAFAGSPVSH--GRSLPVLSST--PPFASLLCDRDSPKQTVTPDSSTRSSGSSQRKSSSY 261

Query: 276 ISKKP 290
           + +KP
Sbjct: 262 LQRKP 266


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,142,077
Number of Sequences: 59808
Number of extensions: 334929
Number of successful extensions: 942
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 936
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)