Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10f10f
         (614 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067607-3|AAF98607.1|  590|Caenorhabditis elegans Hypothetical ...    32   0.28 
Z66497-8|CAA91285.2|  433|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AJ745071-1|CAG32977.1|  433|Caenorhabditis elegans core alpha1,3...    29   2.6  
AC006714-6|AAN84810.2|  339|Caenorhabditis elegans Hypothetical ...    29   2.6  
Z50176-3|CAA90540.1|  196|Caenorhabditis elegans Hypothetical pr...    28   6.1  
AL132847-4|CAB63373.3|  965|Caenorhabditis elegans Hypothetical ...    28   6.1  
Z68493-8|CAA92795.1|  336|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>AF067607-3|AAF98607.1|  590|Caenorhabditis elegans Hypothetical
           protein C18H7.6 protein.
          Length = 590

 Score = 32.3 bits (70), Expect = 0.28
 Identities = 16/61 (26%), Positives = 27/61 (44%)
 Frame = -3

Query: 255 FFLVRLIRHPRMISFELAYLVCIALDRRAKNESTRSTSEHPRVEEPQAGQQQHQDAVGGD 76
           FFL + +   R  S  + +LVC +   +  +      + HP+  EP    + H+D   G 
Sbjct: 517 FFLFKSLLRSRK-SKRICFLVCCSSGDQVGSAENVDMNGHPKTNEPSEKHEDHEDEENGK 575

Query: 75  E 73
           E
Sbjct: 576 E 576


>Z66497-8|CAA91285.2|  433|Caenorhabditis elegans Hypothetical
           protein K08F8.3 protein.
          Length = 433

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +3

Query: 153 SSTHSSPYDLMRCRQDKPTRRRSYEDGGLNEPKKNQKNTNNISKKP 290
           S+ H     +++  + KP +R S+E+   N PKK   N N + K+P
Sbjct: 48  SNDHELDVPILQKEELKPQQRPSFEE---NVPKKKTFNFNPVGKEP 90


>AJ745071-1|CAG32977.1|  433|Caenorhabditis elegans core
           alpha1,3-fucosyltransferase protein.
          Length = 433

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +3

Query: 153 SSTHSSPYDLMRCRQDKPTRRRSYEDGGLNEPKKNQKNTNNISKKP 290
           S+ H     +++  + KP +R S+E+   N PKK   N N + K+P
Sbjct: 48  SNDHELDVPILQKEELKPQQRPSFEE---NVPKKKTFNFNPVGKEP 90


>AC006714-6|AAN84810.2|  339|Caenorhabditis elegans Hypothetical
           protein Y119D3B.12a protein.
          Length = 339

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = +3

Query: 12  DRLRSEGSRERHHA*PRDHQPHRHLLHPG 98
           DR RS       H   RDH+ HRH  H G
Sbjct: 273 DRKRSTEQHHHSHRSSRDHRDHRHRDHRG 301


>Z50176-3|CAA90540.1|  196|Caenorhabditis elegans Hypothetical
           protein C09G1.3 protein.
          Length = 196

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = +1

Query: 385 RRSAMKNNKQQCTQHANKM*HSLRAGHSN*TEALGNVKDISVMSCFIIKW 534
           RR+   N +Q+  +H +     +   +    E+L  V D   MSC +I W
Sbjct: 8   RRTKRNNEEQKTEEHQDVQETRILTYNQKNAESLQQVSDEVFMSCKVIDW 57


>AL132847-4|CAB63373.3|  965|Caenorhabditis elegans Hypothetical
           protein Y48G10A.4 protein.
          Length = 965

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 255 FFLVRLIRHPRMISFELAYLVCI 187
           F L  LIR  R++ F LAY VC+
Sbjct: 713 FHLFSLIRDQRVVDFLLAYAVCL 735


>Z68493-8|CAA92795.1|  336|Caenorhabditis elegans Hypothetical
           protein C33A12.11 protein.
          Length = 336

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = -3

Query: 276 YCLYFFDFFLVRL 238
           +CL+FFDF +VRL
Sbjct: 81  FCLFFFDFLMVRL 93


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,853,358
Number of Sequences: 27780
Number of extensions: 257657
Number of successful extensions: 832
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)