Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10f10f
         (614 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    25   0.59 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   0.78 
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    24   1.0  
AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex det...    23   1.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   1.8  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.4  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    23   3.1  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   3.1  
DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.              21   9.6  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   9.6  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 25.0 bits (52), Expect = 0.59
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 189 CRQDKPTRRRSYEDGGLNEPKKNQ 260
           CR D P  R  Y+ GG++E +K++
Sbjct: 602 CR-DNPAERLGYQKGGISEIQKHK 624


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 24.6 bits (51), Expect = 0.78
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +3

Query: 300 HLSYL*VSFVQSRAFK*LEWLTALDIRTQTI 392
           +LSY  ++ + +R FK L +L  LD+R  +I
Sbjct: 341 NLSYNMLTHIDARMFKDLFFLQILDLRNNSI 371



 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/28 (28%), Positives = 11/28 (39%)
 Frame = +3

Query: 147 CFSSTHSSPYDLMRCRQDKPTRRRSYED 230
           CF+  H   +D   C    P   + Y D
Sbjct: 743 CFALCHCCDFDACDCEMTCPAGCKCYND 770


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 123 PLLGDVLRCFSSTHSSPYDLMRCR 194
           P +  V +C +   S PYD  RCR
Sbjct: 161 PSVKHVAKCATDFSSWPYDTHRCR 184


>AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -2

Query: 475 FNWNAQHVNYVTFYLHVVYIAVYCFSLPIVC 383
           +N+N  + NY   Y +++ I      +PI C
Sbjct: 322 YNYNNYNNNYKPLYYNIINIEQIPVPVPIYC 352


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = -3

Query: 177  RRAKNESTRSTSEHPRVEEPQAGQQQHQ 94
            ++ + +  +  S+ P+ ++PQ  QQQ Q
Sbjct: 1510 QQQQQQQPQQQSQQPQQQQPQPQQQQQQ 1537


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = -3

Query: 189 IALDRRAKNESTRSTSEHPRVEEPQAGQQQHQDAVGG 79
           + +D + +N    ++ + P  +EP A  +  +D+VGG
Sbjct: 140 LQVDTQGENAVKVNSVQVPTDDEPYASFKAMEDSVGG 176


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
 Frame = +3

Query: 78  RHLLHPGAAA-GQPVAPLLGDVLRCFSS 158
           RHLL       G P  PL+G+ L  F S
Sbjct: 35  RHLLELAEKIPGPPALPLIGNALDLFGS 62


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 5/11 (45%), Positives = 8/11 (72%)
 Frame = -1

Query: 443 HILFACCVHCC 411
           H++ +CC  CC
Sbjct: 6   HVVMSCCCWCC 16


>DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -1

Query: 353 KLFKCSGLYKT 321
           KL KC G YKT
Sbjct: 118 KLLKCIGKYKT 128


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 72  PHRHLLHPGAAAGQP 116
           PH+H  H GAA   P
Sbjct: 21  PHQHQQHYGAAVQVP 35


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,892
Number of Sequences: 438
Number of extensions: 3224
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)