Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10f10f
         (614 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g28190.1 68418.m03413 hypothetical protein                          30   1.4  
At5g24920.1 68418.m02951 expressed protein ; expression supporte...    28   4.3  
At5g05350.1 68418.m00576 expressed protein contains Pfam profile...    27   7.5  
At3g10980.1 68416.m01325 expressed protein                             27   7.5  
At1g74720.1 68414.m08658 C2 domain-containing protein contains I...    27   9.9  

>At5g28190.1 68418.m03413 hypothetical protein
          Length = 839

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
 Frame = -1

Query: 587 VIQQE*IISKMFNKRSNVHFIMKHDITEMSFTFPNASVQLECPARKLCHILFAC----CV 420
           ++    ++  M +   +V F++ H +  M   FP  S+  E  A  +C    AC     +
Sbjct: 526 ILHHHQVLVNMESSMVHVIFVLLHHVFWMVLVFPTTSISRESRASFICWSEVACESRKLL 585

Query: 419 HCCLLFFIADRLRTNIQ 369
            C  L F+     TN++
Sbjct: 586 TCGKLSFVVACFSTNVR 602


>At5g24920.1 68418.m02951 expressed protein ; expression supported
           by MPSS
          Length = 147

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = -3

Query: 231 HPRMISFELAYLVCIALDRRAKNESTRSTSEHPRVEEPQAGQQQHQD 91
           +P  ++  +A  +C+      K E     S+H ++EE   GQ Q  D
Sbjct: 77  NPTFLATPVAAKICLDCVNMEKKEGQNGESKHSKLEEHIFGQDQGSD 123


>At5g05350.1 68418.m00576 expressed protein contains Pfam profile
           PF04749: Protein of unknown function, DUF614; expression
           supported by MPSS
          Length = 526

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 6/26 (23%), Positives = 14/26 (53%)
 Frame = -2

Query: 475 FNWNAQHVNYVTFYLHVVYIAVYCFS 398
           F WN + + +   Y+H+    ++C +
Sbjct: 332 FGWNMERIGFGNMYVHIATFVLFCLA 357


>At3g10980.1 68416.m01325 expressed protein 
          Length = 557

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 7/26 (26%), Positives = 14/26 (53%)
 Frame = -2

Query: 475 FNWNAQHVNYVTFYLHVVYIAVYCFS 398
           F WN + V +   Y+H+    ++C +
Sbjct: 355 FGWNMERVGFGNMYVHIATFILFCLA 380


>At1g74720.1 68414.m08658 C2 domain-containing protein contains
           INTERPRO:IPR000008 C2 domain
          Length = 1081

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +3

Query: 57  PRDHQPHRHLLHPGAAAGQPVAPLLGDV 140
           P D+ PHR+  HP      P  P  G+V
Sbjct: 245 PNDNHPHRNDNHPQRPPSPPPPPSAGEV 272


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,852,489
Number of Sequences: 28952
Number of extensions: 226455
Number of successful extensions: 538
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 535
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)