Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10f09f
         (623 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    27   1.7  
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ...    27   2.2  
SPAC1782.05 |||phosphotyrosyl phosphatase activator homolog|Schi...    25   6.7  
SPAC22E12.01 ||SPAC890.09|triose phosphate transporter |Schizosa...    25   8.9  

>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 604

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 510 LGGRTDSRTHKDSCQRRQN*PRHGRC 587
           L G+T  + H +SC  R++  RHG C
Sbjct: 49  LDGKTLEKQHCESCSIREDSSRHGIC 74


>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 905

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +2

Query: 455 KWTTLTLEIQRMPLISSTVGRTNRLKDT*RLLSAKTKLTP 574
           K+T    E+ R   +   +GR + ++ T R+LS +TK  P
Sbjct: 166 KFTVDLTELARNGQLDPVIGREDEIRRTIRVLSRRTKNNP 205


>SPAC1782.05 |||phosphotyrosyl phosphatase activator
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 352

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -3

Query: 570 VNFVFADRSLYVSLSL-FVRPTVDDISGILWISKVN 466
           + +V+    L  S+SL F  P +DDIS +   SKVN
Sbjct: 240 LGYVYFLNKLKPSVSLRFHSPMIDDISAVKTWSKVN 275


>SPAC22E12.01 ||SPAC890.09|triose phosphate transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +1

Query: 61  LVTLVCGTQAFYMFGHEFSRTRLGDAIDKTSLKILKE 171
           +V LV GT AF+M   EF   +    +  +   ILKE
Sbjct: 279 VVILVPGTLAFFMVASEFGLIQKTSIVTLSVCGILKE 315


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,675,856
Number of Sequences: 5004
Number of extensions: 55039
Number of successful extensions: 141
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)