Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10f09f
         (623 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38975| Best HMM Match : Serpin (HMM E-Value=0)                      54   1e-07
SB_55237| Best HMM Match : Serpin (HMM E-Value=0)                      53   2e-07
SB_55238| Best HMM Match : Serpin (HMM E-Value=0)                      38   0.009
SB_17269| Best HMM Match : RRM_1 (HMM E-Value=8.2)                     29   2.3  
SB_14194| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_30912| Best HMM Match : SEA (HMM E-Value=1.1)                       28   7.1  
SB_15981| Best HMM Match : Defensin_2 (HMM E-Value=1.1)                27   9.4  
SB_12889| Best HMM Match : Peptidase_S9 (HMM E-Value=1.4e-38)          27   9.4  

>SB_38975| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 380

 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 30/145 (20%), Positives = 71/145 (48%), Gaps = 3/145 (2%)
 Frame = +1

Query: 196 NVIASPLGVMLLLSLYESGAGAQSKEEIREILG-GGEAQESSHTYGLLNQRYAEFDPKFL 372
           N+  SP  +++ L++   GA   +  ++ +      +  E  H + L     +  D   +
Sbjct: 29  NLFYSPASIVVALAMTYLGARGNTATQMTKTFHFPTDVPEKFHDF-LQALNASNSDGNQI 87

Query: 373 TVANKIYVSDQYKLADAFSRTAN-LFRSEVDNINFGDPKNAA-DIINRWADEQTQGHIKT 546
            +AN+++    +++ + F + +   F +E+  +++    N A D +NRW +++T+  IK 
Sbjct: 88  LMANRLFAQMGFEILEEFKKASKESFSAEMALVDYVKNSNGARDTVNRWVEQKTKDKIKN 147

Query: 547 PVSEDKIDPATAVAMFNVIFFQGHW 621
            + E   +  T + + N ++F+G W
Sbjct: 148 LIPEGMFNKDTILCLVNAVYFKGSW 172


>SB_55237| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 363

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 33/138 (23%), Positives = 69/138 (50%), Gaps = 6/138 (4%)
 Frame = +1

Query: 226 LLLSLYESGAGAQSKEEIREILGGGEAQ--ESSHTYGLLNQRYAEFDPKF--LTVANKIY 393
           + L L   G+   +  +I  I G  E++  E+  T+   ++     D  +  + + NKI+
Sbjct: 3   MALGLVYLGSRGTTAIQIANIFGWKESEFEETHRTFKQFHEALLTSDLGYGEIQLVNKIW 62

Query: 394 VSDQYKLADAFSR-TANLFRSEVDNINFGDPK-NAADIINRWADEQTQGHIKTPVSEDKI 567
             D++++ + F   T   + SE+  ++F +   +A   +N W  +QT+G+IK  +    I
Sbjct: 63  GHDEFEILEEFLHGTREFYHSEMAQVDFVNKAFDARKEVNAWVHQQTKGNIKELIPHGVI 122

Query: 568 DPATAVAMFNVIFFQGHW 621
           +  T + + N ++F+G W
Sbjct: 123 NSLTRLIIVNAVYFKGVW 140


>SB_55238| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 345

 Score = 37.5 bits (83), Expect = 0.009
 Identities = 16/86 (18%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
 Frame = +1

Query: 370 LTVANKIYVSDQYKLADAFSRTAN-LFRSEVDNINFG-DPKNAADIINRWADEQTQGHIK 543
           +++AN +++   + +   F+      + +++  +++  D + A   +N+W +E+T+  I 
Sbjct: 50  MSIANNLFLQKDFSILKEFTDICQKYYDADISLVDYKTDFEGARKHVNQWVEERTKKKIC 109

Query: 544 TPVSEDKIDPATAVAMFNVIFFQGHW 621
             ++    +  T + + N I+F+G W
Sbjct: 110 DLIAPGVFNMLTRLTLVNAIYFKGMW 135


>SB_17269| Best HMM Match : RRM_1 (HMM E-Value=8.2)
          Length = 157

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 7/55 (12%)
 Frame = -2

Query: 328 RMCVMTLEPPLPQGFP*SLPWTV-----HRLQTRTRKAAASRR-EETLSHS-CRQ 185
           R+C+ T  PPLP  F  ++P  +     H   T  R +  SRR + ++ H  CRQ
Sbjct: 81  RICLSTFSPPLPPTFSPTIPPIITSSNFHTTATDGRSSCRSRRGKPSVQHPFCRQ 135


>SB_14194| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1198

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
 Frame = +1

Query: 481  PKNAADI--INRWADEQ-TQGHIKTPVSEDKIDPATAVAMFN 597
            PK +A I  + +W   Q   GH +TP S D + P    A+ N
Sbjct: 1080 PKGSASIDRVRKWVSSQPVGGHTQTPPSYDYLRPLLGAALVN 1121


>SB_30912| Best HMM Match : SEA (HMM E-Value=1.1)
          Length = 354

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 195 ECDSVSSRRDAAAFLVRVWSRCTVQGRDQGNPWGR 299
           E DSV + +D+ A     W+R  +  + + NPW R
Sbjct: 262 EKDSVDTEKDSVATEKNPWTRRKIPWQRKKNPWTR 296


>SB_15981| Best HMM Match : Defensin_2 (HMM E-Value=1.1)
          Length = 890

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +2

Query: 206 RLLSA*CCCFPCTSLE-PVHSPRKRSGKSLGEGRL 307
           RLL++ CCC  CT  +  +H   +R  K+ G  ++
Sbjct: 561 RLLTSACCCKTCTRPKCAIHCSSRRQTKTSGNTKI 595


>SB_12889| Best HMM Match : Peptidase_S9 (HMM E-Value=1.4e-38)
          Length = 253

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = +1

Query: 277 IREILGGGEAQESSHTYGLLNQRYAEFDPKFLTVANKIYVSDQY 408
           I  I GGGE  E  H  G+L  +   FD  F   AN + +S +Y
Sbjct: 81  IANIRGGGEYGEDWHQAGMLGNKQNVFD-DFQAAANYL-ISHEY 122


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,066,507
Number of Sequences: 59808
Number of extensions: 465062
Number of successful extensions: 2211
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2211
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)