Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10f06r
         (767 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    23   2.0  
AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    23   2.7  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    21   8.2  

>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 11/45 (24%), Positives = 19/45 (42%)
 Frame = +2

Query: 296 QQLKYQPSMSHDSCSRAHGISLRQFPLVVDLLIPSCGSSNDMLQY 430
           Q + +   MSH       G +    P  ++ L+P+  S  D+  Y
Sbjct: 344 QAMLHHNPMSHHLKQEPSGFTSSNHPFSINRLLPTAESKADIKMY 388


>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -1

Query: 635 LPEWMSAPHSTGTSI 591
           +P W++ PHS G ++
Sbjct: 4   VPGWLTPPHSLGNTV 18


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
          beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -2

Query: 34 FLETNFPNF 8
          +L TNFPNF
Sbjct: 27 YLRTNFPNF 35


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,960
Number of Sequences: 336
Number of extensions: 3319
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20650031
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)