Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10f06r
(767 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_4103| Best HMM Match : Proteasome (HMM E-Value=8.2e-05) 145 4e-35
SB_10931| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 8e-12
SB_48652| Best HMM Match : RVT_1 (HMM E-Value=0.0009) 42 4e-04
SB_24524| Best HMM Match : Proteasome (HMM E-Value=1.4013e-45) 40 0.002
SB_55640| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.77
SB_12417| Best HMM Match : Antimicrobial11 (HMM E-Value=7.9) 30 2.4
SB_8210| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_6334| Best HMM Match : zf-C2H2 (HMM E-Value=1.5e-26) 28 7.2
SB_58424| Best HMM Match : ADAM_spacer1 (HMM E-Value=8.5e-23) 28 9.5
>SB_4103| Best HMM Match : Proteasome (HMM E-Value=8.2e-05)
Length = 131
Score = 145 bits (351), Expect = 4e-35
Identities = 68/128 (53%), Positives = 84/128 (65%)
Frame = -1
Query: 386 DPPLVETAAAIFRELCYNYRDSLMAGILVAGWDKKKGAQIYSIPIGGMVQRQAXXXXXXX 207
+P LV+TAA +FRE+CY YRD L AGI+ AGWDK G Q+YSIP+GGM RQ
Sbjct: 3 EPVLVKTAANLFREMCYGYRDQLSAGIICAGWDKLNGGQVYSIPLGGMCIRQPFTIGGSG 62
Query: 206 XXXXXXXVDANFKPNMTKEEAKKFVTDTLTLAILRDGSSGGVVRLGVITEAGVERSVILG 27
DA +K M+KEE FV + LA+ RDGSSGG++R+ I E GVER VILG
Sbjct: 63 STYIYGHCDATYKSGMSKEECFNFVKTAVALAMSRDGSSGGIIRMAGIDETGVERRVILG 122
Query: 26 DQLPKFYE 3
++LP FYE
Sbjct: 123 NELPTFYE 130
>SB_10931| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 467
Score = 50.0 bits (114), Expect(2) = 8e-12
Identities = 25/92 (27%), Positives = 46/92 (50%)
Frame = -1
Query: 602 GTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQAIADIV 423
GT+ +A +F GV++ DSR T G+YIA++ K+ +I + +G AAD ++
Sbjct: 28 GTTTLAFKFKHGVIVAVDSRATAGSYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLL 87
Query: 422 TYHLNFHKMELGDPPLVETAAAIFRELCYNYR 327
+++ + V A+ I + Y Y+
Sbjct: 88 AKQCRIYELRNKERISVAAASKILANMVYYYK 119
Score = 37.9 bits (84), Expect(2) = 8e-12
Identities = 23/78 (29%), Positives = 34/78 (43%)
Frame = -1
Query: 311 GILVAGWDKKKGAQIYSIPIGGMVQRQAXXXXXXXXXXXXXXVDANFKPNMTKEEAKKFV 132
G ++ GWDKK G +Y + G +D+ +K +M+ EEA
Sbjct: 152 GTMICGWDKK-GPGLYYVDSDGTRLSNQMFSVGSGSTYAYGVMDSGYKYDMSPEEAYDLG 210
Query: 131 TDTLTLAILRDGSSGGVV 78
++ A RD SGGVV
Sbjct: 211 VRSIYHATHRDAYSGGVV 228
>SB_48652| Best HMM Match : RVT_1 (HMM E-Value=0.0009)
Length = 938
Score = 42.3 bits (95), Expect = 4e-04
Identities = 21/71 (29%), Positives = 39/71 (54%)
Frame = -1
Query: 635 LPEWMSAPHSTGTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGS 456
L +W P +TGTS++ +F+GGV++ AD+ + G+ R +L ++ + +G
Sbjct: 866 LADWY--PTTTGTSVLGIKFNGGVLMAADTLGSYGSLARYRNISRLMRVNENTIIGAAGD 923
Query: 455 AADTQAIADIV 423
AD Q I ++
Sbjct: 924 YADFQYIKSVL 934
>SB_24524| Best HMM Match : Proteasome (HMM E-Value=1.4013e-45)
Length = 291
Score = 40.3 bits (90), Expect = 0.002
Identities = 43/195 (22%), Positives = 78/195 (40%), Gaps = 10/195 (5%)
Frame = -1
Query: 602 GTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQAIADIV 423
G +++A + VI +D+R + G I R + K+ K+T SG D + +
Sbjct: 87 GGTVLAISGEDFAVIASDTRLSQGFQIHTRDSPKVYKLTGSTVLGCSGFHGDCLTLTKHI 146
Query: 422 TYHLNFHKMELGDPPLVETAAAIFRELCYNYR-DSLMAGILVAGWDKKKGAQIYSIPIGG 246
+ L ++ + G A + + Y R ++AG D + ++S G
Sbjct: 147 SARLQMYEHDHGKAMSCTAIAQMLSTMLYYRRFFPYYTYNILAGLDSEGKGCVFSFDPVG 206
Query: 245 MVQRQAXXXXXXXXXXXXXXVD--ANFK-----PN--MTKEEAKKFVTDTLTLAILRDGS 93
+R+ +D FK P+ +T+++A V D T A RD
Sbjct: 207 SYEREVYRAGGSASALLQPLLDNQIGFKNQEGVPHTPLTRDKAVALVKDVFTSAAERDIY 266
Query: 92 SGGVVRLGVITEAGV 48
+G V + V++ GV
Sbjct: 267 TGDAVIINVVSSEGV 281
>SB_55640| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1071
Score = 31.5 bits (68), Expect = 0.77
Identities = 17/36 (47%), Positives = 21/36 (58%)
Frame = -1
Query: 152 EEAKKFVTDTLTLAILRDGSSGGVVRLGVITEAGVE 45
EEAK+ V D + I D SG V L VIT+ GV+
Sbjct: 2 EEAKQLVRDGIAAGIFNDLGSGSNVDLCVITKDGVD 37
>SB_12417| Best HMM Match : Antimicrobial11 (HMM E-Value=7.9)
Length = 219
Score = 29.9 bits (64), Expect = 2.4
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = -2
Query: 610 IVRELQSW-HASLMVESSLELIPVPQQALTSPIESPTS*RKSLTRYTAAAQD 458
I R+L+S H S V ELIP+ SP++SP + R +R + +D
Sbjct: 164 IPRDLRSMSHDSGRVPRDPELIPLSSPGTLSPVQSPPTPRPQFSRKASIRRD 215
>SB_8210| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1935
Score = 28.3 bits (60), Expect = 7.2
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Frame = -1
Query: 485 DQIYCCRSGSAADTQAIAD-IVTYHLNFHKMELG-DPPLVETAAAIFRELCYNYRDSLMA 312
D + C S T+ D ++TY N H + G DP E +ELC ++ D+L
Sbjct: 358 DNVIVCVSQDEIATRLPRDNVITY--NVHWSDEGIDPESCEEHQNYIKELCDHFYDTLKG 415
Query: 311 GILVAGWDKKK 279
I A +K+K
Sbjct: 416 SIQDAIAEKEK 426
>SB_6334| Best HMM Match : zf-C2H2 (HMM E-Value=1.5e-26)
Length = 611
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Frame = -1
Query: 626 WMSAPHSTGTSIMACEFDGGVVIGADSRTTTGAY---IANRVTDKLTKITDQIYCCRSGS 456
W S PH ++ F+G IG + T Y ++ R + + + + + R G+
Sbjct: 29 WKSPPHLESVALQRARFNGEPSIGGITSAFTSTYETSLSERPVENVYTVCNSLAAGRGGT 88
Query: 455 AADTQAI 435
++ A+
Sbjct: 89 SSSPVAV 95
>SB_58424| Best HMM Match : ADAM_spacer1 (HMM E-Value=8.5e-23)
Length = 487
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = -1
Query: 680 RKMATSVINTYSDPCLPEWMSAPHSTGTSIMACEFDGGVVIGADSRTTTGAY 525
R SV Y PC P W+S + ++ M D +V+ D +T G++
Sbjct: 193 RPRPLSVRACYKRPCPPPWVSGNWTKRSNFMRSPMDERLVVNRD-QTADGSH 243
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,187,889
Number of Sequences: 59808
Number of extensions: 411463
Number of successful extensions: 1106
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1037
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1102
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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