Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10f06r
(767 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006672-3|AAK84540.1| 239|Caenorhabditis elegans Proteasome be... 202 2e-52
Z99709-4|CAB16855.1| 277|Caenorhabditis elegans Hypothetical pr... 101 4e-22
Z81564-1|CAB04567.1| 284|Caenorhabditis elegans Hypothetical pr... 87 2e-17
AC006708-4|AAF60416.2| 250|Caenorhabditis elegans Proteasome al... 37 0.018
Z81079-4|CAB03081.1| 236|Caenorhabditis elegans Hypothetical pr... 33 0.17
Z81035-5|CAB02738.1| 246|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z82265-5|CAB05175.1| 334|Caenorhabditis elegans Hypothetical pr... 29 4.8
Z81028-3|CAB02691.1| 545|Caenorhabditis elegans Hypothetical pr... 28 8.4
>AC006672-3|AAK84540.1| 239|Caenorhabditis elegans Proteasome beta
subunit protein 1 protein.
Length = 239
Score = 202 bits (493), Expect = 2e-52
Identities = 95/196 (48%), Positives = 131/196 (66%)
Frame = -1
Query: 608 STGTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQAIAD 429
STGT+++A E++GGVV+G DSRT+ G++I +R T+K+T ITD + CRSGSAADTQAIAD
Sbjct: 21 STGTTLIAMEYNGGVVVGTDSRTSAGSFITSRATNKITPITDNMVVCRSGSAADTQAIAD 80
Query: 428 IVTYHLNFHKMELGDPPLVETAAAIFRELCYNYRDSLMAGILVAGWDKKKGAQIYSIPIG 249
I YH++ + M P + ++ IFR+ YNYR+ L A +LVAGWD++ G Q+Y+IPIG
Sbjct: 81 IAKYHIDVYTMTENKPVTIYRSSQIFRQFLYNYREQLSASVLVAGWDEELGGQVYAIPIG 140
Query: 248 GMVQRQAXXXXXXXXXXXXXXVDANFKPNMTKEEAKKFVTDTLTLAILRDGSSGGVVRLG 69
G V RQ +D+ ++PN+T EE K V + LA RDGSSGGVVRL
Sbjct: 141 GFVSRQRSTASGSGSTFVQGFLDSQWRPNLTLEECKAIVKQAVGLATFRDGSSGGVVRLA 200
Query: 68 VITEAGVERSVILGDQ 21
VI +AG + + D+
Sbjct: 201 VINKAGSQFELFRPDK 216
>Z99709-4|CAB16855.1| 277|Caenorhabditis elegans Hypothetical
protein C47B2.4 protein.
Length = 277
Score = 101 bits (243), Expect = 4e-22
Identities = 62/200 (31%), Positives = 103/200 (51%)
Frame = -1
Query: 608 STGTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQAIAD 429
STGT+I+A F GG+V+GADSR T G IA++ +K+ K+T+ IY C +G+AAD +
Sbjct: 44 STGTTIVAVAFKGGLVMGADSRATAGNIIADKHCEKVHKLTESIYACGAGTAADLDQVTK 103
Query: 428 IVTYHLNFHKMELGDPPLVETAAAIFRELCYNYRDSLMAGILVAGWDKKKGAQIYSIPIG 249
+++ +L ++ G V TA ++ +NY+ + A +L+ G D G +Y
Sbjct: 104 MLSGNLRLLELNTGRKARVITALRQAKQHLFNYQGYIGAYLLIGGVD-PTGPHLYMCSAN 162
Query: 248 GMVQRQAXXXXXXXXXXXXXXVDANFKPNMTKEEAKKFVTDTLTLAILRDGSSGGVVRLG 69
G ++ +FK +MTK+EA+K V L + D +SG + L
Sbjct: 163 GTTMAFPFTAQGSGSYAAITILERDFKVDMTKDEAEKLVQRALEAGMHGDNASGNSLNLV 222
Query: 68 VITEAGVERSVILGDQLPKF 9
+I + +V G +P+F
Sbjct: 223 IIEPS---ETVFKGPIVPEF 239
>Z81564-1|CAB04567.1| 284|Caenorhabditis elegans Hypothetical
protein K05C4.1 protein.
Length = 284
Score = 86.6 bits (205), Expect = 2e-17
Identities = 54/172 (31%), Positives = 82/172 (47%), Gaps = 1/172 (0%)
Frame = -1
Query: 572 GGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQAIADIVTYHLNFHKME 393
GG+++ DSR ++G YI+++ K+ I D++ +G AAD Q IV + +++
Sbjct: 81 GGIIVAVDSRASSGEYISSKSVMKILDIGDRMVATMAGGAADCQFWTRIVAKYCTLYELR 140
Query: 392 LGDPPLVETAAAIFRELCYNYR-DSLMAGILVAGWDKKKGAQIYSIPIGGMVQRQAXXXX 216
V A+ F Y YR L G +VAG+D KKG QI+ + G +
Sbjct: 141 EKTSITVSAASKYFANTLYGYRGQGLSVGSMVAGYD-KKGPQIFKVDSEGDRCQLKVCSV 199
Query: 215 XXXXXXXXXXVDANFKPNMTKEEAKKFVTDTLTLAILRDGSSGGVVRLGVIT 60
+D ++KP MT +EA+K + A RD SGGV L IT
Sbjct: 200 GSGSLNAYGILDNHYKPKMTDDEARKLGLRAIMHATYRDSGSGGVCNLCHIT 251
>AC006708-4|AAF60416.2| 250|Caenorhabditis elegans Proteasome alpha
subunit protein 3 protein.
Length = 250
Score = 36.7 bits (81), Expect = 0.018
Identities = 36/159 (22%), Positives = 63/159 (39%), Gaps = 9/159 (5%)
Frame = -1
Query: 569 GVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQAIADIVTYHLNFHKMEL 390
G+V+ A+ + + +T+K+ +++D I C +G AD + + + + ++
Sbjct: 42 GIVVAAERKNVHKLLDDSVMTEKVYRLSDNISCTVAGITADANILINHLRWWAASYRNSY 101
Query: 389 GDPPLVETAAAIFRELCYNYRDSLMAG--------ILVAGWDKKKGAQIY-SIPIGGMVQ 237
G+ VE + + LC + G +L GWDK G Q+Y S P G
Sbjct: 102 GEEMPVE---QLVQNLCNEKQRYTQIGGKRPFGVSLLYIGWDKHYGYQLYQSDPSGNYTG 158
Query: 236 RQAXXXXXXXXXXXXXXVDANFKPNMTKEEAKKFVTDTL 120
+A PN+ EEAK+ L
Sbjct: 159 WKATCIGSNHQAAVTLLKQEYKSPNL--EEAKQLAIKVL 195
>Z81079-4|CAB03081.1| 236|Caenorhabditis elegans Hypothetical
protein F39H11.5 protein.
Length = 236
Score = 33.5 bits (73), Expect = 0.17
Identities = 16/64 (25%), Positives = 30/64 (46%)
Frame = -1
Query: 614 PHSTGTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQAI 435
P TGTS++A ++ GVV+ D + G + + K+ D + G AD +
Sbjct: 13 PTCTGTSVIALQYKTGVVVLTDRVVSYGKMARYKNVSRQYKVNDNVLIAFGGDHADFHWL 72
Query: 434 ADIV 423
+++
Sbjct: 73 QNVI 76
>Z81035-5|CAB02738.1| 246|Caenorhabditis elegans Hypothetical
protein C15H11.7 protein.
Length = 246
Score = 29.1 bits (62), Expect = 3.6
Identities = 29/129 (22%), Positives = 48/129 (37%), Gaps = 5/129 (3%)
Frame = -1
Query: 617 APHSTGTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQA 438
A +ST + +A + VI R +A+ VT + +I+ + CC G D +
Sbjct: 31 AINSTNLTAVAVKGADAAVIAVQKRVPDSLIVADTVTS-VYQISQSVGCCAIGMIPDAKF 89
Query: 437 IADIVTYHLNFHKMELGDPPLVETAAAIFRELCYNYRD-----SLMAGILVAGWDKKKGA 273
K + G E A +L Y SL +L +D +KG
Sbjct: 90 QIKRAQGEAASWKYKNGYDMPCELLAKKMADLNQYYTQNAEMRSLGCALLFISYDDEKGP 149
Query: 272 QIYSIPIGG 246
++Y + G
Sbjct: 150 EVYRVDPAG 158
>Z82265-5|CAB05175.1| 334|Caenorhabditis elegans Hypothetical
protein F02H6.7 protein.
Length = 334
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = -1
Query: 362 AAIFRELCYNYRDSLMAGILVAGW-DKKKGAQIYSIPIG 249
A+ FRE Y+Y L VAGW DK +I P G
Sbjct: 248 ASNFRESFYSYNYKLEKDSAVAGWIDKAGNCEIADFPTG 286
>Z81028-3|CAB02691.1| 545|Caenorhabditis elegans Hypothetical
protein B0365.6 protein.
Length = 545
Score = 27.9 bits (59), Expect = 8.4
Identities = 23/99 (23%), Positives = 36/99 (36%)
Frame = -1
Query: 632 PEWMSAPHSTGTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSA 453
P W+ S + +C++D D G Y L ++ + +Y SGS
Sbjct: 79 PYWLGIKCSLSGNPASCQWD-------DQSGNAGGYNGFAPGYPLVEVGNCVYVPTSGSF 131
Query: 452 ADTQAIADIVTYHLNFHKMELGDPPLVETAAAIFRELCY 336
A D T LNF P+ +T + + CY
Sbjct: 132 AGKWLSGDCNTMSLNFICETAPTSPITDTCSFQYNGNCY 170
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,606,946
Number of Sequences: 27780
Number of extensions: 301383
Number of successful extensions: 751
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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