Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10f06r
(767 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g31300.1 68417.m04441 20S proteasome beta subunit A (PBA1) (P... 208 2e-54
At3g27430.2 68416.m03429 20S proteasome beta subunit B (PBB1) id... 103 1e-22
At3g27430.1 68416.m03428 20S proteasome beta subunit B (PBB1) id... 103 1e-22
At5g40580.2 68418.m04925 20S proteasome beta subunit B (PBB2) (P... 102 2e-22
At5g40580.1 68418.m04924 20S proteasome beta subunit B (PBB2) (P... 102 2e-22
At1g13060.1 68414.m01514 20S proteasome beta subunit E1 (PBE1) (... 81 8e-16
At3g26340.1 68416.m03286 20S proteasome beta subunit E, putative... 74 9e-14
At3g22110.1 68416.m02791 20S proteasome alpha subunit C (PAC1) (... 42 3e-04
At4g14800.1 68417.m02275 20S proteasome beta subunit D2 (PBD2) (... 42 5e-04
At1g77440.1 68414.m09018 20S proteasome beta subunit C (PBC2) id... 41 8e-04
At3g60820.1 68416.m06804 20S proteasome beta subunit F1 (PBF1) 37 0.013
At4g02570.1 68417.m00351 cullin family protein similar to cullin... 28 7.9
At2g24450.1 68415.m02922 fasciclin-like arabinogalactan family p... 28 7.9
>At4g31300.1 68417.m04441 20S proteasome beta subunit A (PBA1)
(PRCD) identical to cDNA proteasome subunit prcd
GI:2511593
Length = 233
Score = 208 bits (509), Expect = 2e-54
Identities = 97/207 (46%), Positives = 137/207 (66%)
Frame = -1
Query: 623 MSAPHSTGTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADT 444
+ APHS GT+I+ ++GGVV+GADSRT+TG Y+ANR +DK+T++TD +Y CRSGSAAD+
Sbjct: 5 LDAPHSMGTTIIGVTYNGGVVLGADSRTSTGMYVANRASDKITQLTDNVYVCRSGSAADS 64
Query: 443 QAIADIVTYHLNFHKMELGDPPLVETAAAIFRELCYNYRDSLMAGILVAGWDKKKGAQIY 264
Q ++D V Y L+ H ++ G P V+ +A + R L YN ++ L G++V GWDK +G +IY
Sbjct: 65 QVVSDYVRYFLHQHTIQHGQPATVKVSANLIRMLAYNNKNMLQTGLIVGGWDKYEGGKIY 124
Query: 263 SIPIGGMVQRQAXXXXXXXXXXXXXXVDANFKPNMTKEEAKKFVTDTLTLAILRDGSSGG 84
IP+GG V Q D +K NMTKEEA++ V ++LAI RDG+SGG
Sbjct: 125 GIPLGGTVVEQPFAIGGSGSSYLYGFFDQAWKDNMTKEEAEQLVVKAVSLAIARDGASGG 184
Query: 83 VVRLGVITEAGVERSVILGDQLPKFYE 3
VVR +I GV R+ GD+L ++E
Sbjct: 185 VVRTVIINSEGVTRNFYPGDKLQLWHE 211
>At3g27430.2 68416.m03429 20S proteasome beta subunit B (PBB1)
identical to 20S proteasome beta subunit PBB1 (PBB1)
GB:AAC32066 [Arabidopsis thaliana] (Genetics 149 (2),
677-692 (1998)); contains Pfam profile: PF00227
proteasome A-type and B-type;
Length = 273
Score = 103 bits (247), Expect = 1e-22
Identities = 55/187 (29%), Positives = 97/187 (51%)
Frame = -1
Query: 605 TGTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQAIADI 426
TGT+I+ F GV++GAD+R T G +A++ +K+ + IYCC +G+AADT+A+ D+
Sbjct: 38 TGTTIVGLIFKDGVILGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVTDM 97
Query: 425 VTYHLNFHKMELGDPPLVETAAAIFRELCYNYRDSLMAGILVAGWDKKKGAQIYSIPIGG 246
V+ L H+ + G V TA + ++ ++Y+ + A +++ G D G +++I G
Sbjct: 98 VSSQLRLHRYQTGRDSRVITALTLLKKHLFSYQGHVSAALVLGGVD-ITGPHLHTIYPHG 156
Query: 245 MVQRQAXXXXXXXXXXXXXXVDANFKPNMTKEEAKKFVTDTLTLAILRDGSSGGVVRLGV 66
+A +K +T++E K V +++ I D SG V + V
Sbjct: 157 STDTLPFATMGSGSLAAMSVFEAKYKEGLTRDEGIKLVAESICSGIFNDLGSGSNVDICV 216
Query: 65 ITEAGVE 45
IT+ E
Sbjct: 217 ITKGNKE 223
>At3g27430.1 68416.m03428 20S proteasome beta subunit B (PBB1)
identical to 20S proteasome beta subunit PBB1 (PBB1)
GB:AAC32066 [Arabidopsis thaliana] (Genetics 149 (2),
677-692 (1998)); contains Pfam profile: PF00227
proteasome A-type and B-type;
Length = 267
Score = 103 bits (247), Expect = 1e-22
Identities = 55/187 (29%), Positives = 97/187 (51%)
Frame = -1
Query: 605 TGTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQAIADI 426
TGT+I+ F GV++GAD+R T G +A++ +K+ + IYCC +G+AADT+A+ D+
Sbjct: 38 TGTTIVGLIFKDGVILGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVTDM 97
Query: 425 VTYHLNFHKMELGDPPLVETAAAIFRELCYNYRDSLMAGILVAGWDKKKGAQIYSIPIGG 246
V+ L H+ + G V TA + ++ ++Y+ + A +++ G D G +++I G
Sbjct: 98 VSSQLRLHRYQTGRDSRVITALTLLKKHLFSYQGHVSAALVLGGVD-ITGPHLHTIYPHG 156
Query: 245 MVQRQAXXXXXXXXXXXXXXVDANFKPNMTKEEAKKFVTDTLTLAILRDGSSGGVVRLGV 66
+A +K +T++E K V +++ I D SG V + V
Sbjct: 157 STDTLPFATMGSGSLAAMSVFEAKYKEGLTRDEGIKLVAESICSGIFNDLGSGSNVDICV 216
Query: 65 ITEAGVE 45
IT+ E
Sbjct: 217 ITKGNKE 223
>At5g40580.2 68418.m04925 20S proteasome beta subunit B (PBB2)
(PRCFC) identical to 20S proteasome beta subunit PBB2
[Arabidopsis thaliana] GI:3421104, cDNA proteasome
subunit prcfc GI:2511575
Length = 274
Score = 102 bits (245), Expect = 2e-22
Identities = 55/187 (29%), Positives = 96/187 (51%)
Frame = -1
Query: 605 TGTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQAIADI 426
TGT+I+ F GV++GAD+R T G +A++ +K+ + IYCC +G+AADT+A+ D+
Sbjct: 38 TGTTIVGLIFKDGVILGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVTDM 97
Query: 425 VTYHLNFHKMELGDPPLVETAAAIFRELCYNYRDSLMAGILVAGWDKKKGAQIYSIPIGG 246
V+ L H+ + G V TA + ++ ++Y+ + A +++ G D G +++I G
Sbjct: 98 VSSQLRLHRYQTGRDSRVVTALTLLKKHLFSYQGHVSAALVLGGVD-ITGPHLHTIYPHG 156
Query: 245 MVQRQAXXXXXXXXXXXXXXVDANFKPNMTKEEAKKFVTDTLTLAILRDGSSGGVVRLGV 66
+A +K +T++E K V + + I D SG V + V
Sbjct: 157 STDTLPFATMGSGSLAAMSVFEAKYKEGLTRDEGIKLVAEAICSGIFNDLGSGSNVDICV 216
Query: 65 ITEAGVE 45
IT+ E
Sbjct: 217 ITKGHKE 223
>At5g40580.1 68418.m04924 20S proteasome beta subunit B (PBB2)
(PRCFC) identical to 20S proteasome beta subunit PBB2
[Arabidopsis thaliana] GI:3421104, cDNA proteasome
subunit prcfc GI:2511575
Length = 274
Score = 102 bits (245), Expect = 2e-22
Identities = 55/187 (29%), Positives = 96/187 (51%)
Frame = -1
Query: 605 TGTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQAIADI 426
TGT+I+ F GV++GAD+R T G +A++ +K+ + IYCC +G+AADT+A+ D+
Sbjct: 38 TGTTIVGLIFKDGVILGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVTDM 97
Query: 425 VTYHLNFHKMELGDPPLVETAAAIFRELCYNYRDSLMAGILVAGWDKKKGAQIYSIPIGG 246
V+ L H+ + G V TA + ++ ++Y+ + A +++ G D G +++I G
Sbjct: 98 VSSQLRLHRYQTGRDSRVVTALTLLKKHLFSYQGHVSAALVLGGVD-ITGPHLHTIYPHG 156
Query: 245 MVQRQAXXXXXXXXXXXXXXVDANFKPNMTKEEAKKFVTDTLTLAILRDGSSGGVVRLGV 66
+A +K +T++E K V + + I D SG V + V
Sbjct: 157 STDTLPFATMGSGSLAAMSVFEAKYKEGLTRDEGIKLVAEAICSGIFNDLGSGSNVDICV 216
Query: 65 ITEAGVE 45
IT+ E
Sbjct: 217 ITKGHKE 223
>At1g13060.1 68414.m01514 20S proteasome beta subunit E1 (PBE1)
(PRCE) identical to GB:O23717; identical to cDNA
proteasome subunit prce GI:2511595
Length = 274
Score = 81.0 bits (191), Expect = 8e-16
Identities = 51/178 (28%), Positives = 86/178 (48%), Gaps = 1/178 (0%)
Frame = -1
Query: 611 HSTGTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQAIA 432
H+ GT+ +A F GGV++ ADSR + G YI+++ K+ +I + +G AAD Q
Sbjct: 54 HAKGTTTLAFIFKGGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWH 113
Query: 431 DIVTYHLNFHKMELGDPPLVETAAAIFRELCYNYRD-SLMAGILVAGWDKKKGAQIYSIP 255
+ H++ V A+ + + Y+YR L G ++AGWD + G +Y +
Sbjct: 114 RNLGIKCRLHELANKRRISVSGASKLLANMLYSYRGMGLSVGTMIAGWD-ETGPGLYYVD 172
Query: 254 IGGMVQRQAXXXXXXXXXXXXXXVDANFKPNMTKEEAKKFVTDTLTLAILRDGSSGGV 81
G + +D+ +K +M+ EEA + ++ A RDG+SGGV
Sbjct: 173 NEGGRLKGDRFSVGSGSPYAYGVLDSGYKYDMSVEEASELARRSIYHATFRDGASGGV 230
>At3g26340.1 68416.m03286 20S proteasome beta subunit E, putative
very strong similarity to SP|O23717 Proteasome subunit
beta type 5 precursor (EC 3.4.25.1) (20S proteasome
subunit E) (Proteasome epsilon chain) {Arabidopsis
thaliana}
Length = 273
Score = 74.1 bits (174), Expect = 9e-14
Identities = 49/175 (28%), Positives = 83/175 (47%), Gaps = 1/175 (0%)
Frame = -1
Query: 602 GTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQAIADIV 423
GT+ +A F GV++ ADSR + G YI+++ K+ +I + +G AAD Q +
Sbjct: 57 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNL 116
Query: 422 TYHLNFHKMELGDPPLVETAAAIFRELCYNYRD-SLMAGILVAGWDKKKGAQIYSIPIGG 246
H++ V A+ + + Y+YR L G ++AGWD + G +Y + G
Sbjct: 117 GIKCRLHELANKRRISVSGASKLLANMLYSYRGMGLSVGTMIAGWD-ETGPGLYYVDNEG 175
Query: 245 MVQRQAXXXXXXXXXXXXXXVDANFKPNMTKEEAKKFVTDTLTLAILRDGSSGGV 81
+ +D+ +K +M+ EEA + ++ A RDG+SGGV
Sbjct: 176 GRLKGDRFSVGSGSPYAYGVLDSGYKFDMSVEEASELARRSIYHATFRDGASGGV 230
>At3g22110.1 68416.m02791 20S proteasome alpha subunit C (PAC1)
(PRC9) identical to GB:AAC32057 from [Arabidopsis
thaliana] (Genetics (1998) 149 (2), 677-692); identical
to cDNA proteasome subunit prc9 GI:2511583
Length = 250
Score = 42.3 bits (95), Expect = 3e-04
Identities = 38/174 (21%), Positives = 63/174 (36%), Gaps = 5/174 (2%)
Frame = -1
Query: 623 MSAPHSTGTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADT 444
M A + G++I DG V+IG + + T+ + +K+ KI D + C +G +D
Sbjct: 25 MEAIGNAGSAIGILSKDGVVLIG-EKKVTSKLLQTSTSAEKMYKIDDHVACAVAGIMSDA 83
Query: 443 QAIADIVTYHLNFHKMELGDPPLVETAAAIFRELCYNYRD-----SLMAGILVAGWDKKK 279
+ + + +P VE + Y L AGWDK
Sbjct: 84 NILINTARVQAQRYTFMYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKHH 143
Query: 278 GAQIYSIPIGGMVQRQAXXXXXXXXXXXXXXVDANFKPNMTKEEAKKFVTDTLT 117
G Q+Y G + ++K + T+EEA + LT
Sbjct: 144 GFQLYMSDPSGNYGGWKAAAVGANNQAAQSILKQDYKDDATREEAVELALKVLT 197
>At4g14800.1 68417.m02275 20S proteasome beta subunit D2 (PBD2)
(PRCGA) identical to SP|O24633 Proteasome subunit beta
type 2-2 (EC 3.4.25.1) (20S proteasome alpha subunit D2)
{Arabidopsis thaliana}, cDNA proteasome subunit prcga
GI:2511571
Length = 199
Score = 41.9 bits (94), Expect = 5e-04
Identities = 33/150 (22%), Positives = 60/150 (40%), Gaps = 2/150 (1%)
Frame = -1
Query: 575 DGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQAIADIVTYHLNFHKM 396
+G ++ AD+ + DK+ + SG D + V +++ ++
Sbjct: 10 NGFAIVAADTSAVHSILLHKNKEDKIMTLDSHKLVAASGEPGDRVQFTEYVQKNVSLYQF 69
Query: 395 ELGDPPLVETAAAIFR-ELCYNYRDS-LMAGILVAGWDKKKGAQIYSIPIGGMVQRQAXX 222
G P AA R EL R + IL+AG+DK+ GA +Y I + +
Sbjct: 70 RNGIPLSTAAAANFTRGELATALRKNPYSVNILMAGYDKEAGASLYYIDYIATLHKVDKG 129
Query: 221 XXXXXXXXXXXXVDANFKPNMTKEEAKKFV 132
+D +++ +M+ EEA + V
Sbjct: 130 AFGYGSYFSLSTMDRHYRSDMSVEEAIELV 159
>At1g77440.1 68414.m09018 20S proteasome beta subunit C (PBC2)
identical to residues 14-204 of 20S proteasome beta
subunit PBC2 GB:AAC32069 [Arabidopsis thaliana]
Length = 204
Score = 41.1 bits (92), Expect = 8e-04
Identities = 45/203 (22%), Positives = 81/203 (39%), Gaps = 4/203 (1%)
Frame = -1
Query: 623 MSAPHSTGTSIMACEFDGGVVIGADSRTTTGAYIANRVTD--KLTKITDQIYCCRSGSAA 450
MS G++++A I +D R G + TD +++KI D ++ SG A
Sbjct: 1 MSIFEYNGSAVVAMVGKNCFAIASDRRL--GVQLQTIATDFQRISKIHDHLFIGLSGLAT 58
Query: 449 DTQAIADIVTYHLNFHKMELGDPPLVETAAAIFRELCYNYR-DSLMAGILVAGW-DKKKG 276
D Q + + + +++ ET A++ + Y R + ++AG D K
Sbjct: 59 DVQTLYQRLVFRHKLYQLREERDMKPETFASLVSAILYEKRFGPFLCQPVIAGLGDDNKP 118
Query: 275 AQIYSIPIGGMVQRQAXXXXXXXXXXXXXXVDANFKPNMTKEEAKKFVTDTLTLAILRDG 96
IG + +A FKP+M EE + ++ L ++ RD
Sbjct: 119 FICTMDSIGAKELAKDFVVSGTASESLYGACEAMFKPDMEAEELFETISQALLSSVDRDC 178
Query: 95 SSGGVVRLGVITEAGVERSVILG 27
SG + V+T V+ ++ G
Sbjct: 179 LSGWGGHVYVVTPKEVKERILKG 201
>At3g60820.1 68416.m06804 20S proteasome beta subunit F1 (PBF1)
Length = 223
Score = 37.1 bits (82), Expect = 0.013
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Frame = -1
Query: 626 WMSAPHSTGTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAAD 447
W ++ GT + D VI AD+R +TG I +R K+ K+ D+ SG AD
Sbjct: 8 WSPYDNNGGTCVAIAGSDY-CVIAADTRMSTGYSILSRDYSKIHKLADRAVLSSSGFQAD 66
Query: 446 TQAIADIV-TYHLNF---HKMELGDPPLVE 369
+A+ ++ + HL + H ++ P + +
Sbjct: 67 VKALQKVLKSRHLIYQHQHNKQMSCPAMAQ 96
>At4g02570.1 68417.m00351 cullin family protein similar to cullin 3
[Homo sapiens] GI:3639052; contains Pfam profile
PF00888: Cullin family
Length = 738
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -1
Query: 383 PPLVETAAAIFRELCYNYRDSLMAGILVAGWDK-KKGAQI 267
PPL E FR+L YN S + ++A DK ++G QI
Sbjct: 126 PPLNEVGLTCFRDLVYNELHSKVKQAVIALVDKEREGEQI 165
>At2g24450.1 68415.m02922 fasciclin-like arabinogalactan family
protein similar to fasciclin-like
arabinogalactan-protein 1 [Arabidopsis thaliana]
gi|13377776|gb|AAK20857
Length = 280
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +1
Query: 466 RQQYIWSVIFVSLSVTRLAM*APVVVRESAPMTTPPSNS 582
R Y SV+ +S+ + + +PV V PM++PP+ S
Sbjct: 155 RNPYNLSVVQISMPIVAPGLGSPVKVPPPPPMSSPPAPS 193
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,867,808
Number of Sequences: 28952
Number of extensions: 285732
Number of successful extensions: 687
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1721869952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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