Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10f06f
(588 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_4103| Best HMM Match : Proteasome (HMM E-Value=8.2e-05) 81 9e-16
SB_10931| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 1e-07
SB_48652| Best HMM Match : RVT_1 (HMM E-Value=0.0009) 42 3e-04
SB_24524| Best HMM Match : Proteasome (HMM E-Value=1.4013e-45) 31 0.92
SB_12417| Best HMM Match : Antimicrobial11 (HMM E-Value=7.9) 30 1.6
SB_8210| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_6334| Best HMM Match : zf-C2H2 (HMM E-Value=1.5e-26) 28 4.9
SB_58424| Best HMM Match : ADAM_spacer1 (HMM E-Value=8.5e-23) 28 6.5
SB_28271| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-14) 27 8.6
>SB_4103| Best HMM Match : Proteasome (HMM E-Value=8.2e-05)
Length = 131
Score = 80.6 bits (190), Expect = 9e-16
Identities = 34/52 (65%), Positives = 41/52 (78%)
Frame = +1
Query: 382 DPPLVETAAAIFRELCYNYRDSLMAGILVAGWDKKKGAQIYSIPIGGMVQRQ 537
+P LV+TAA +FRE+CY YRD L AGI+ AGWDK G Q+YSIP+GGM RQ
Sbjct: 3 EPVLVKTAANLFREMCYGYRDQLSAGIICAGWDKLNGGQVYSIPLGGMCIRQ 54
>SB_10931| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 467
Score = 50.0 bits (114), Expect(2) = 1e-07
Identities = 25/92 (27%), Positives = 46/92 (50%)
Frame = +1
Query: 166 GTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQAIADIV 345
GT+ +A +F GV++ DSR T G+YIA++ K+ +I + +G AAD ++
Sbjct: 28 GTTTLAFKFKHGVIVAVDSRATAGSYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLL 87
Query: 346 TYHLNFHKMELGDPPLVETAAAIFRELCYNYR 441
+++ + V A+ I + Y Y+
Sbjct: 88 AKQCRIYELRNKERISVAAASKILANMVYYYK 119
Score = 23.0 bits (47), Expect(2) = 1e-07
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +1
Query: 457 GILVAGWDKKKGAQIYSIPIGG 522
G ++ GWD KKG +Y + G
Sbjct: 152 GTMICGWD-KKGPGLYYVDSDG 172
>SB_48652| Best HMM Match : RVT_1 (HMM E-Value=0.0009)
Length = 938
Score = 42.3 bits (95), Expect = 3e-04
Identities = 21/71 (29%), Positives = 39/71 (54%)
Frame = +1
Query: 133 LPEWMSAPHSTGTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGS 312
L +W P +TGTS++ +F+GGV++ AD+ + G+ R +L ++ + +G
Sbjct: 866 LADWY--PTTTGTSVLGIKFNGGVLMAADTLGSYGSLARYRNISRLMRVNENTIIGAAGD 923
Query: 313 AADTQAIADIV 345
AD Q I ++
Sbjct: 924 YADFQYIKSVL 934
>SB_24524| Best HMM Match : Proteasome (HMM E-Value=1.4013e-45)
Length = 291
Score = 30.7 bits (66), Expect = 0.92
Identities = 26/125 (20%), Positives = 51/125 (40%), Gaps = 1/125 (0%)
Frame = +1
Query: 166 GTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQAIADIV 345
G +++A + VI +D+R + G I R + K+ K+T SG D + +
Sbjct: 87 GGTVLAISGEDFAVIASDTRLSQGFQIHTRDSPKVYKLTGSTVLGCSGFHGDCLTLTKHI 146
Query: 346 TYHLNFHKMELGDPPLVETAAAIFRELCYNYR-DSLMAGILVAGWDKKKGAQIYSIPIGG 522
+ L ++ + G A + + Y R ++AG D + ++S G
Sbjct: 147 SARLQMYEHDHGKAMSCTAIAQMLSTMLYYRRFFPYYTYNILAGLDSEGKGCVFSFDPVG 206
Query: 523 MVQRQ 537
+R+
Sbjct: 207 SYERE 211
>SB_12417| Best HMM Match : Antimicrobial11 (HMM E-Value=7.9)
Length = 219
Score = 29.9 bits (64), Expect = 1.6
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +2
Query: 158 IVRELQSW-HASLMVESSLELIPVPQQALTSPIESPTS*RKSLTRYTAAAQD 310
I R+L+S H S V ELIP+ SP++SP + R +R + +D
Sbjct: 164 IPRDLRSMSHDSGRVPRDPELIPLSSPGTLSPVQSPPTPRPQFSRKASIRRD 215
>SB_8210| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1935
Score = 28.3 bits (60), Expect = 4.9
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Frame = +1
Query: 283 DQIYCCRSGSAADTQAIAD-IVTYHLNFHKMELG-DPPLVETAAAIFRELCYNYRDSLMA 456
D + C S T+ D ++TY N H + G DP E +ELC ++ D+L
Sbjct: 358 DNVIVCVSQDEIATRLPRDNVITY--NVHWSDEGIDPESCEEHQNYIKELCDHFYDTLKG 415
Query: 457 GILVAGWDKKK 489
I A +K+K
Sbjct: 416 SIQDAIAEKEK 426
>SB_6334| Best HMM Match : zf-C2H2 (HMM E-Value=1.5e-26)
Length = 611
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Frame = +1
Query: 142 WMSAPHSTGTSIMACEFDGGVVIGADSRTTTGAY---IANRVTDKLTKITDQIYCCRSGS 312
W S PH ++ F+G IG + T Y ++ R + + + + + R G+
Sbjct: 29 WKSPPHLESVALQRARFNGEPSIGGITSAFTSTYETSLSERPVENVYTVCNSLAAGRGGT 88
Query: 313 AADTQAI 333
++ A+
Sbjct: 89 SSSPVAV 95
>SB_58424| Best HMM Match : ADAM_spacer1 (HMM E-Value=8.5e-23)
Length = 487
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = +1
Query: 88 RKMATSVINTYSDPCLPEWMSAPHSTGTSIMACEFDGGVVIGADSRTTTGAY 243
R SV Y PC P W+S + ++ M D +V+ D +T G++
Sbjct: 193 RPRPLSVRACYKRPCPPPWVSGNWTKRSNFMRSPMDERLVVNRD-QTADGSH 243
>SB_28271| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-14)
Length = 686
Score = 27.5 bits (58), Expect = 8.6
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = -2
Query: 311 DPERQQYIWSVIFV 270
DPE+Q Y+W+ +FV
Sbjct: 253 DPEKQVYVWTAVFV 266
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,673,796
Number of Sequences: 59808
Number of extensions: 327696
Number of successful extensions: 843
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 840
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1422302661
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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