Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10f05r
         (755 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10 |Schizo...    81   1e-16
SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc...    27   2.2  
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces...    26   5.0  
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom...    26   5.0  
SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit Mcm5|Schi...    25   8.8  
SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl...    25   8.8  

>SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 81.4 bits (192), Expect = 1e-16
 Identities = 44/109 (40%), Positives = 58/109 (53%)
 Frame = -1

Query: 749 DPSIMAIGPVPAIENLLKVTKLTLNDVDLIEINEAFVAQTLSCAKALKLDMSKLNVNGGA 570
           DP      P  AI   LK   +  + VD  EINEAF    ++  K L LD  ++N+NGG 
Sbjct: 287 DPERFTTSPSLAIPKALKHAGIEASQVDYYEINEAFSVVAVANTKILGLDPERVNINGGG 346

Query: 569 TALGHPLGASGSRITAHLVHEXXXXXXXXGVGSACIGGGQGIALMIETV 423
            A+GHPLG+SGSRI   L +         GV + C GGG   +++IE V
Sbjct: 347 VAMGHPLGSSGSRIICTLAYILAQKDAKIGVAAVCNGGGGASSIVIERV 395


>SPBC16A3.08c |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 284

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 456 PADAGRPHPAPQPAPSELVHEVRRDP 533
           PA  GRP+ AP+  PSE   + ++ P
Sbjct: 247 PARGGRPNRAPRRGPSETASKTQQAP 272


>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 693

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -2

Query: 679 SMMSTLLRSTRPSWLR 632
           SM  T LRS+RPSW R
Sbjct: 516 SMEQTSLRSSRPSWTR 531


>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 892

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
 Frame = -1

Query: 752 GDPSIMAIGPVPAIENLLKVTKLTLNDV-DLIEINEAFVAQTLSCAKALKLDMSKLNVNG 576
           GD +I A   + A   +  + +    D+ D + I+EA   QT+S AKA     + LN   
Sbjct: 520 GDFTIEAGALMLADNGICAIDEFDKMDLSDQVAIHEAMEQQTISIAKA--GIQATLNART 577

Query: 575 GATALGHPLGASGSRIT 525
              A  +P+G   +R T
Sbjct: 578 SILAAANPIGGRYNRKT 594


>SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit
           Mcm5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = -1

Query: 752 GDPSIMAIGPVPAIENLLKVTKLTLNDVDLIEINEAFVAQTLSCAKA 612
           G   ++A G +  I+   K     + D D + I+EA   QT+S AKA
Sbjct: 422 GGAMVLADGGIVCIDEFDK-----MRDEDRVAIHEAMEQQTISIAKA 463


>SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +3

Query: 582 DVQLAHVELQRLGTRQRLSHEGLVDLNKVDIIE 680
           DVQ A +   ++  +QRL+ +  +D N VD++E
Sbjct: 363 DVQSAQITQFQIRLQQRLTKKEQLDRNWVDLLE 395


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,325,086
Number of Sequences: 5004
Number of extensions: 37998
Number of successful extensions: 92
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)