Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10f05r
         (755 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30177| Best HMM Match : No HMM Matches (HMM E-Value=.)             126   1e-29
SB_12473| Best HMM Match : No HMM Matches (HMM E-Value=.)              61   1e-09
SB_51267| Best HMM Match : Thiolase_N (HMM E-Value=2.2e-35)            35   0.082
SB_34146| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_25136| Best HMM Match : Thiolase_N (HMM E-Value=4.4e-09)            29   3.1  
SB_12155| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.4  
SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.4  

>SB_30177| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 643

 Score =  126 bits (305), Expect = 1e-29
 Identities = 60/102 (58%), Positives = 73/102 (71%)
 Frame = -1

Query: 755 GGDPSIMAIGPVPAIENLLKVTKLTLNDVDLIEINEAFVAQTLSCAKALKLDMSKLNVNG 576
           G DP+IM IGPVP+I+  L+    TL+D+D+IE+NEAF  Q L+  K L LDMSK NVNG
Sbjct: 51  GVDPAIMGIGPVPSIKCALERAGKTLDDMDIIEVNEAFAPQFLAVQKDLGLDMSKTNVNG 110

Query: 575 GATALGHPLGASGSRITAHLVHEXXXXXXXXGVGSACIGGGQ 450
           GA ALGHP+G SG+R+T HL HE         +GSACIGGGQ
Sbjct: 111 GAIALGHPVGTSGARLTVHLTHEMMRKGLKYSIGSACIGGGQ 152


>SB_12473| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 387

 Score = 60.9 bits (141), Expect = 1e-09
 Identities = 33/70 (47%), Positives = 40/70 (57%)
 Frame = -1

Query: 755 GGDPSIMAIGPVPAIENLLKVTKLTLNDVDLIEINEAFVAQTLSCAKALKLDMSKLNVNG 576
           G DPS+M  GP+PA    L      + DVDL E+NEAF AQ+ +  + L LD SK NV  
Sbjct: 289 GVDPSVMGTGPIPATRKALSKAGWKVEDVDLFELNEAFAAQSCAVIRELGLDPSK-NVVD 347

Query: 575 GATALGHPLG 546
             T L H LG
Sbjct: 348 CETRLDHALG 357


>SB_51267| Best HMM Match : Thiolase_N (HMM E-Value=2.2e-35)
          Length = 415

 Score = 34.7 bits (76), Expect = 0.082
 Identities = 17/41 (41%), Positives = 24/41 (58%)
 Frame = -1

Query: 746 PSIMAIGPVPAIENLLKVTKLTLNDVDLIEINEAFVAQTLS 624
           P    I P  AI  +L++  L  +D+D+ EINEAF A  L+
Sbjct: 188 PIDFPIAPAAAIPKVLRLAHLRKDDIDMWEINEAFSAVALA 228


>SB_34146| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 110

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 447 ALPPADAGRPHPAPQPAPSELVHEVRRDPG 536
           A+PPA   +  P P+ +P+E   E   DPG
Sbjct: 55  AMPPASPPKKSPPPEKSPAEKRKEKLEDPG 84


>SB_25136| Best HMM Match : Thiolase_N (HMM E-Value=4.4e-09)
          Length = 162

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -1

Query: 731 IGPVPAIENLLKVTKLTLNDVDLIEINEAF 642
           + P  A   LL+ T L L+D+D+ E +EAF
Sbjct: 128 LSPAYATPKLLEKTGLKLSDIDVFEFHEAF 157


>SB_12155| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 298

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 10/77 (12%)
 Frame = -1

Query: 716 AIENLLKVTKLTLNDVDLIEINEAFVAQTLSCAKALKL----------DMSKLNVNGGAT 567
           A  +  +V+ L   DVD+ E+++ F    L   +AL L          D +K + N    
Sbjct: 153 AAADCYRVSGLQAQDVDVFEVHDCFSCNELFMYEALGLCGEGKGGQLIDEAKWHTNSA-- 210

Query: 566 ALGHPLGASGSRITAHL 516
             GHP+GA+G    A L
Sbjct: 211 --GHPIGATGLAQCAEL 225


>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1448

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +3

Query: 441  GDALPPADAGRPHPAPQPAPSELVHEVRRDPGAGSAERVSQRGG 572
            G A+PP+        PQP  S  ++ +  D  +   ER+ +RGG
Sbjct: 988  GFAVPPSCYNNYLLLPQPCKSFRLNTILPDVHSSKGERIQRRGG 1031


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,574,826
Number of Sequences: 59808
Number of extensions: 308697
Number of successful extensions: 1047
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1034
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)