Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10f05f
(612 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0071 + 548255-548399,548478-548651,548787-548892,548992-54... 106 2e-23
09_02_0075 + 3916373-3916400,3916760-3916858,3916943-3917116,391... 103 1e-22
10_08_0258 + 16261454-16261540,16261636-16261712,16262734-162628... 74 8e-14
02_05_1230 - 35099942-35100018,35100138-35100221,35100367-351004... 68 5e-12
02_05_0052 - 25433204-25434151 34 0.10
03_02_0167 - 6088818-6089870 31 0.54
01_07_0008 + 40389744-40389896,40389967-40390048,40390693-403908... 31 0.54
11_01_0122 - 960346-960728,961356-961608 31 0.95
07_03_0376 + 17437308-17437536,17438049-17438149,17438246-174384... 30 1.3
10_02_0127 + 5555226-5555446,5555475-5555500,5555702-5555790,555... 30 1.7
01_07_0290 - 42542201-42542359,42542443-42542551,42542729-425435... 30 1.7
03_06_0454 + 34044351-34044499,34045495-34045510,34045640-340458... 29 2.9
02_05_1052 + 33770355-33773981,33774217-33774336,33774880-337749... 28 5.1
08_02_1553 + 27835320-27835364,27836853-27836966,27837062-278374... 28 6.7
05_06_0290 - 26961926-26962423 28 6.7
03_06_0340 + 33252677-33252864,33253086-33254442,33254565-332546... 28 6.7
01_05_0780 + 25136994-25137230 28 6.7
>01_01_0071 +
548255-548399,548478-548651,548787-548892,548992-549130,
549216-549293,549395-549460,550061-550201,550417-550527,
550614-550655,550739-550825,551033-551118,551681-551684
Length = 392
Score = 106 bits (254), Expect = 2e-23
Identities = 62/162 (38%), Positives = 87/162 (53%)
Frame = +3
Query: 126 RTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMVVGQVISSSQTDGIYTPRH 305
RTP G G + AT+L ++A AL+ A V PA V + +G V+S++ G R
Sbjct: 24 RTPIGALLGSLSSLPATKLGSVAIQAALRRANVEPALVQEVFMGNVLSANL--GQAPARQ 81
Query: 306 AALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAAKISVAGGVENMSQAPFAVRNV 485
AAL AG+P P +N++C SG ++++ +AQ I G + VAGG+E+MS AP V
Sbjct: 82 AALGAGLPDTVPCTTVNKVCSSGMKAVMLAAQTIQLGMHDVVVAGGMESMSNAPKYVAAA 141
Query: 486 RFGTALGTNYAFEDTLWAGLSDSYCGLPMGMTAEKLGAQFGI 611
R G+ G + + L GL D Y PMGM AE Q I
Sbjct: 142 RRGSRFGHDVLIDGMLKDGLWDVYNDFPMGMCAELCADQHSI 183
>09_02_0075 +
3916373-3916400,3916760-3916858,3916943-3917116,
3917207-3917312,3917671-3917809,3918457-3918534,
3918863-3918928,3919213-3919298,3919939-3920038,
3920245-3920355,3920457-3920498,3920671-3920757,
3921013-3921102
Length = 401
Score = 103 bits (246), Expect = 1e-22
Identities = 63/154 (40%), Positives = 83/154 (53%)
Frame = +3
Query: 126 RTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMVVGQVISSSQTDGIYTPRH 305
RTP G F G + SAT+L +IA ALK A V PA V + G V+S++ G R
Sbjct: 18 RTPMGGFLGALSSLSATKLGSIAIEAALKRANVDPALVQEVFFGNVLSANL--GQAPARQ 75
Query: 306 AALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAAKISVAGGVENMSQAPFAVRNV 485
AAL AGIP +N++C SG ++ + +AQ IL G I VAGG+E+MS AP +
Sbjct: 76 AALGAGIPNTVVCSAVNKVCASGMKATMFAAQSILLGINDIVVAGGMESMSNAPKYIAEA 135
Query: 486 RFGTALGTNYAFEDTLWAGLSDSYCGLPMGMTAE 587
R G+ G + + L GL D Y MG AE
Sbjct: 136 RKGSRFGHDTLVDGMLKDGLWDVYGDFAMGNCAE 169
>10_08_0258 +
16261454-16261540,16261636-16261712,16262734-16262818,
16262931-16263057,16263147-16263245,16263343-16263410,
16263514-16263621,16263727-16263804,16263921-16264053,
16264138-16264234,16264465-16264588,16264668-16264776,
16264899-16264982,16265071-16265180
Length = 461
Score = 74.1 bits (174), Expect = 8e-14
Identities = 49/154 (31%), Positives = 78/154 (50%)
Frame = +3
Query: 150 GVFRNTSATELQTIATVGALKEAGVSPAQVDSMVVGQVISSSQTDGIYTPRHAALKAGIP 329
G F++T A +L + + ++P++V +VVG V++ I R AA AG P
Sbjct: 67 GGFKDTPAEDLLVPVFKALIDKTKLNPSEVGDIVVGTVLAPGSQRAIEC-RMAAFYAGFP 125
Query: 330 QEKPVLGINRLCGSGFQSIVNSAQDILTGAAKISVAGGVENMSQAPFAVRNVRFGTALGT 509
P++ +NR C SG Q++ N A +I G I +A G+E+M+ V VR +
Sbjct: 126 DTVPLMTVNRQCSSGLQAVANVASNIKAGLYDIGIAAGLESMT-----VNQVRLDGQVNP 180
Query: 510 NYAFEDTLWAGLSDSYCGLPMGMTAEKLGAQFGI 611
L++ D C LPMG+T+E + +FGI
Sbjct: 181 KV----ELFSQARD--CLLPMGLTSENVAKRFGI 208
>02_05_1230 -
35099942-35100018,35100138-35100221,35100367-35100475,
35100564-35100687,35101157-35101253,35101375-35101507,
35101654-35101731,35101821-35101928,35102011-35102078,
35102181-35102279,35102379-35102505,35102623-35102707,
35103297-35103373,35103482-35103562
Length = 448
Score = 68.1 bits (159), Expect = 5e-12
Identities = 44/154 (28%), Positives = 71/154 (46%)
Frame = +3
Query: 150 GVFRNTSATELQTIATVGALKEAGVSPAQVDSMVVGQVISSSQTDGIYTPRHAALKAGIP 329
G F++T +L T+ L ++P ++ +VVG V+ I R AA AG+P
Sbjct: 65 GGFKDTYPEDLLTVVLKAVLDNTKINPGEIGDIVVGTVLGPGSQRAIEC-RAAAFYAGVP 123
Query: 330 QEKPVLGINRLCGSGFQSIVNSAQDILTGAAKISVAGGVENMSQAPFAVRNVRFGTALGT 509
+ PV +NR C SG Q++ + A I G I + G+E+MS A+G
Sbjct: 124 ENVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMSV-----------NAMGW 172
Query: 510 NYAFEDTLWAGLSDSYCGLPMGMTAEKLGAQFGI 611
+ C LPMG+T+E + ++G+
Sbjct: 173 EGQVNPKVNEVQKAQDCLLPMGITSENVAHRYGV 206
>02_05_0052 - 25433204-25434151
Length = 315
Score = 33.9 bits (74), Expect = 0.10
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = +3
Query: 150 GVFRNTSATELQTIATVGALKEAGVSPAQVDSMVVGQVISSSQTDGIYTP 299
G+F N ++ ELQ I +G + G+SP Q +V G +S T G TP
Sbjct: 239 GLFDNVTSEELQRIVAMG--RALGLSPKQTADVVAGFAYEASTTMGRDTP 286
>03_02_0167 - 6088818-6089870
Length = 350
Score = 31.5 bits (68), Expect = 0.54
Identities = 25/82 (30%), Positives = 39/82 (47%)
Frame = +2
Query: 257 PSHLFITN*RNLHATSRGAQSWYSSREAGARHQQTMRLWFPVDREQRSGHFDRRSQDLSS 436
P L ++ R ATS+G + SS + GAR ++T+RL+ + + R QDL
Sbjct: 233 PPRLDMSFGRFTFATSQGVEEEGSSYDVGARGKRTVRLFVAAEGKPMYA-AGRGMQDLLE 291
Query: 437 GGSREHVASALRGQKREVRHGS 502
G +A +R + R GS
Sbjct: 292 SGGGLPLAVTVRARSRYRMVGS 313
>01_07_0008 +
40389744-40389896,40389967-40390048,40390693-40390808,
40391107-40391195,40391859-40391904,40392248-40392716,
40392825-40392952,40393182-40393253,40393512-40393885,
40394005-40394545,40394653-40394952,40395167-40395268
Length = 823
Score = 31.5 bits (68), Expect = 0.54
Identities = 20/82 (24%), Positives = 37/82 (45%)
Frame = -2
Query: 401 LSAVHDRLETRAA*SVDAEHRLLLRNTSFERRVTWRVDSVSL**RDDLAHDHAVDLSRGH 222
++ H+RL+ +++ + +N++F+RR+ W +D D + H D+ G
Sbjct: 109 IAEAHERLKVDNVDALNCYYAHADKNSTFQRRIYWMLDPA----YDHIVFVHYRDVQEGS 164
Query: 221 SGLLQRTDSGYRLQFGRGCVAE 156
+ DS Q G G AE
Sbjct: 165 ISVSALNDSSTSNQNGSGSRAE 186
>11_01_0122 - 960346-960728,961356-961608
Length = 211
Score = 30.7 bits (66), Expect = 0.95
Identities = 29/89 (32%), Positives = 35/89 (39%), Gaps = 1/89 (1%)
Frame = +2
Query: 170 RDRTAD-DSHCRCAEGGRSVPGSGRQHGRGPSHLFITN*RNLHATSRGAQSWYSSREAGA 346
R RT SH R +GG G G HG G + A +RG+ + S GA
Sbjct: 28 RSRTTKVASHERIRDGGGG--GGGGIHGSGSKEALVYGAGG--ARARGSAAALSDGVCGA 83
Query: 347 RHQQTMRLWFPVDREQRSGHFDRRSQDLS 433
R QQ L PV R S D+S
Sbjct: 84 RVQQLHLLQHPVKNAVAERKHTRISSDMS 112
>07_03_0376 +
17437308-17437536,17438049-17438149,17438246-17438463,
17438544-17438901
Length = 301
Score = 30.3 bits (65), Expect = 1.3
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Frame = +3
Query: 165 TSATELQTIATVGALKEAGV--SPAQVDSMVVGQVISSSQTDGIYTPRHAALKAGIPQEK 338
T A L +A + A AG SP S V + S + P+H L A Q
Sbjct: 10 TVAGLLVAVAAIMAASPAGAQPSPGYYPSSVHRAMAFSRDYTNKWGPQHQTLSAD--QSS 67
Query: 339 PVLGINRLCGSGFQS 383
+ +++ CGSGF+S
Sbjct: 68 LTIWLDKTCGSGFKS 82
>10_02_0127 +
5555226-5555446,5555475-5555500,5555702-5555790,
5558112-5558843
Length = 355
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = +3
Query: 321 GIPQEKPVLGIN-RLCGSGFQSIVNSAQDILTGAAKISVAGGVENMSQAPFAVRNVR 488
G+P E P + R C S S A++ A++ G SQA +AV N +
Sbjct: 244 GVPGEAPAIAAEIRDCASASSSASGHAKETAAELARLDAMGDAAKGSQARWAVSNAK 300
>01_07_0290 - 42542201-42542359,42542443-42542551,42542729-42543516,
42543601-42543744,42543840-42544013,42544056-42544369,
42544467-42544636,42544916-42545043,42545125-42545185,
42545473-42545642,42545783-42547387,42547479-42547631,
42547747-42547905,42548066-42548236,42548357-42548404,
42548509-42548624,42548885-42549029,42549122-42549220
Length = 1570
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +2
Query: 317 SWYSSREAGARHQQTMRLWFPVDREQRSGHFDRRSQDLSSGGSRE 451
SWYSS AG ++ F + R G ++R++ + GG RE
Sbjct: 1353 SWYSSNSAGTQN-------FTIAGSSRPGEWNRKNNNRGQGGGRE 1390
>03_06_0454 +
34044351-34044499,34045495-34045510,34045640-34045862,
34045969-34046092,34046168-34046294,34046821-34046882,
34046972-34048023,34048167-34048556,34048667-34052628,
34052710-34052796,34052885-34053004,34053096-34053152
Length = 2122
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +3
Query: 297 PRHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILT 413
PR LK P+E I+R+C Q I++S Q I +
Sbjct: 249 PRTTKLKYRYPRESDHKNISRICREHLQEIISSQQKIFS 287
>02_05_1052 +
33770355-33773981,33774217-33774336,33774880-33774996,
33775322-33775411,33775971-33776078,33776304-33776351
Length = 1369
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +1
Query: 490 SARLWAPTTPSKTPSGPDSRTPTA 561
S+R+ APT+PS PS P S + ++
Sbjct: 100 SSRISAPTSPSSAPSSPSSSSSSS 123
>08_02_1553 +
27835320-27835364,27836853-27836966,27837062-27837457,
27837751-27837822,27837957-27838082,27838164-27838244,
27838364-27838558,27839018-27840013
Length = 674
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +2
Query: 335 EAGARHQQTMRLWFPVDREQRSGHFDRRSQDLSSGGSREHVASALRGQKR 484
+A AR + + + PVD R GH +G R V++A + Q+R
Sbjct: 394 KAAARARASSSVLRPVDARHRGGHDAGDLSSSGNGSVRSSVSAAAKEQRR 443
>05_06_0290 - 26961926-26962423
Length = 165
Score = 27.9 bits (59), Expect = 6.7
Identities = 33/116 (28%), Positives = 43/116 (37%), Gaps = 4/116 (3%)
Frame = +2
Query: 137 WYLRRSLPQHIRDRTADDSHCRCAEGGRSVPGSGRQHGRGPSHLFITN*RNLHA----TS 304
W LPQ I R A H + S+PG R R + + T+ R A T
Sbjct: 37 WRNHEQLPQEITARNAPREHTQSPH--LSLPGPRR---RARTSIPPTDPRREEAGQEETD 91
Query: 305 RGAQSWYSSREAGARHQQTMRLWFPVDREQRSGHFDRRSQDLSSGGSREHVASALR 472
+ S + AR Q+ L +R H D + L SGGS A A R
Sbjct: 92 ADSSSPVLGSDGDARIQRPSSLGAAWQERERRQHADPPASTLGSGGSGLRRAGASR 147
>03_06_0340 +
33252677-33252864,33253086-33254442,33254565-33254667,
33256081-33256171,33257208-33257300,33258316-33258471,
33258583-33258655
Length = 686
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = -2
Query: 224 HSGLLQRTDSGYRLQFGRGCVAEDSAEGTKRRPLTEADMIQNYTYP 87
HS L Q ++G RL+ A KRR L +D Y YP
Sbjct: 583 HSSLQQSMETGIRLRNSPKFRANGDCHNRKRRKLKMSDPKYAYPYP 628
>01_05_0780 + 25136994-25137230
Length = 78
Score = 27.9 bits (59), Expect = 6.7
Identities = 18/55 (32%), Positives = 21/55 (38%)
Frame = +2
Query: 161 QHIRDRTADDSHCRCAEGGRSVPGSGRQHGRGPSHLFITN*RNLHATSRGAQSWY 325
Q +R D EGG G G HGR HL A SR +SW+
Sbjct: 24 QRLRAAAVVDGVVDADEGGGGDDGGGSGHGRRREHLSWRT--QTRAASRQRRSWH 76
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,203,129
Number of Sequences: 37544
Number of extensions: 393349
Number of successful extensions: 1348
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1346
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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