Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10f05f
(612 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_30176| Best HMM Match : No HMM Matches (HMM E-Value=.) 88 1e-24
SB_12473| Best HMM Match : No HMM Matches (HMM E-Value=.) 105 3e-23
SB_41352| Best HMM Match : MIB_HERC2 (HMM E-Value=3.1) 37 0.015
SB_51267| Best HMM Match : Thiolase_N (HMM E-Value=2.2e-35) 31 0.56
SB_39227| Best HMM Match : DRMBL (HMM E-Value=0.76) 28 5.2
SB_57607| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.2
SB_25361| Best HMM Match : Cadherin (HMM E-Value=0) 28 6.9
SB_38600| Best HMM Match : Ank (HMM E-Value=6.9e-36) 27 9.1
SB_22411| Best HMM Match : Kinesin (HMM E-Value=6.8e-17) 27 9.1
SB_21796| Best HMM Match : COLFI (HMM E-Value=0) 27 9.1
SB_9403| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_3115| Best HMM Match : AAA (HMM E-Value=0) 27 9.1
>SB_30176| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1012
Score = 87.8 bits (208), Expect(2) = 1e-24
Identities = 42/92 (45%), Positives = 58/92 (63%)
Frame = +3
Query: 126 RTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMVVGQVISSSQTDGIYTPRH 305
RT FG FGG ++ +AT L A+V A++ V PA VDS++ G V+ + D Y RH
Sbjct: 711 RTAFGAFGGRLKDFTATVLGEHASVAAMESGKVDPATVDSVIFGNVLQCAN-DAAYVARH 769
Query: 306 AALKAGIPQEKPVLGINRLCGSGFQSIVNSAQ 401
+K+ +P P L +NRLCGSGFQSI++ AQ
Sbjct: 770 IGIKSKVPVTTPALTVNRLCGSGFQSIISGAQ 801
Score = 42.7 bits (96), Expect(2) = 1e-24
Identities = 18/30 (60%), Positives = 22/30 (73%)
Frame = +3
Query: 522 EDTLWAGLSDSYCGLPMGMTAEKLGAQFGI 611
EDTLW GL+D GLPMG+TAE L ++ I
Sbjct: 803 EDTLWQGLTDMLPGLPMGITAENLAEKYNI 832
>SB_12473| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 387
Score = 105 bits (252), Expect = 3e-23
Identities = 61/162 (37%), Positives = 87/162 (53%)
Frame = +3
Query: 126 RTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMVVGQVISSSQTDGIYTPRH 305
RTP G+ G + A EL +I AL A +SP V +++GQV+++ Q G R
Sbjct: 17 RTPVGSHNGDLSSLKAHELGSIVVKEALCRASISPCDVSEVILGQVLTAGQGQG--PARQ 74
Query: 306 AALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAAKISVAGGVENMSQAPFAVRNV 485
AA+ AGIP P G+N LCGSG +++ Q + G + I VAGG E+MSQAP ++
Sbjct: 75 AAIHAGIPACVPAYGVNMLCGSGLKAVALGYQAVAMGDSNIVVAGGQESMSQAPHCC-HM 133
Query: 486 RFGTALGTNYAFEDTLWAGLSDSYCGLPMGMTAEKLGAQFGI 611
R G + L GL DS+ MG+TAE + Q+ +
Sbjct: 134 RPALKFGDMTLIDTMLKDGLMDSFNNYHMGITAENVAKQWEV 175
>SB_41352| Best HMM Match : MIB_HERC2 (HMM E-Value=3.1)
Length = 271
Score = 36.7 bits (81), Expect = 0.015
Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = +2
Query: 305 RGAQSWYSSREAGARHQQTMRLWFPVDREQRSGHFD-RRSQDLSSGGSREHVASALRGQK 481
RGAQ+W S +E ++ + + RSG+F+ R S D SSG R H AS R +
Sbjct: 28 RGAQNWSSPQERSWTSEE-----YGGEESYRSGNFEARESSDASSGSKRRHRASPHRHKY 82
Query: 482 REVRH 496
E RH
Sbjct: 83 HE-RH 86
>SB_51267| Best HMM Match : Thiolase_N (HMM E-Value=2.2e-35)
Length = 415
Score = 31.5 bits (68), Expect = 0.56
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +3
Query: 324 IPQEKPVLGINRLCGSGFQSIVNSAQDILTGA 419
+P P IN++C SG +SI+ +AQ ++ G+
Sbjct: 26 LPISTPCTTINKVCASGMKSIMAAAQSLMCGS 57
>SB_39227| Best HMM Match : DRMBL (HMM E-Value=0.76)
Length = 600
Score = 28.3 bits (60), Expect = 5.2
Identities = 17/67 (25%), Positives = 32/67 (47%)
Frame = +2
Query: 311 AQSWYSSREAGARHQQTMRLWFPVDREQRSGHFDRRSQDLSSGGSREHVASALRGQKREV 490
++S Y S E ++H +R + S DRR D+ GG +S + ++ +V
Sbjct: 401 SESVYESIEDNSQHNNRLRSVPRLGNTFESARRDRR--DVGEGGCHIAESSTMHAEESDV 458
Query: 491 RHGSGHQ 511
+ G G++
Sbjct: 459 KVGQGNE 465
>SB_57607| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 28.3 bits (60), Expect = 5.2
Identities = 19/82 (23%), Positives = 34/82 (41%)
Frame = +3
Query: 267 SSSQTDGIYTPRHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAAKISVAGGV 446
+++ D R AA ++ P E+ V+ + S I+NS ++ + V V
Sbjct: 186 NNNNNDAEEVDREAATRSPSPNEQQVIQEDNKRQSRLAWIINSGKNTTNTLLPLQVVSDV 245
Query: 447 ENMSQAPFAVRNVRFGTALGTN 512
+N Q + +R R TN
Sbjct: 246 QNSEQVVYNLRRGRTIRPFPTN 267
>SB_25361| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 4833
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Frame = +2
Query: 386 REQRSGHFDRRSQDLSSGGSREHVASALR-----GQKREVRHGSGHQ 511
R++ + H + S+D + GSR+H+ R G + ++ HGS Q
Sbjct: 4515 RDRLNQHSNHGSRDRINRGSRDHINHGSRDHINHGSRDQINHGSSEQ 4561
>SB_38600| Best HMM Match : Ank (HMM E-Value=6.9e-36)
Length = 852
Score = 27.5 bits (58), Expect = 9.1
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = +2
Query: 101 FESCLLQLKDAVWYLRRSLPQHIRDRT 181
+ +CL D VW L +++P H+ T
Sbjct: 159 YGACLKHHADVVWLLAKTMPHHVNTAT 185
>SB_22411| Best HMM Match : Kinesin (HMM E-Value=6.8e-17)
Length = 505
Score = 27.5 bits (58), Expect = 9.1
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +3
Query: 162 NTSATELQTI-ATVGALKEAGVSPAQVDSMVVGQVISSSQTDGIYTPRHAALKAGIPQEK 338
N+ A +QT+ A V +LK S Q S+ V SSS++ +PR A A P K
Sbjct: 48 NSLAAAVQTLTAEVQSLKADHASSRQSHSLPPSDVASSSRSPTDVSPRRA--PASSPLRK 105
Query: 339 P 341
P
Sbjct: 106 P 106
>SB_21796| Best HMM Match : COLFI (HMM E-Value=0)
Length = 1239
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 5/40 (12%)
Frame = -3
Query: 286 PSVCDEEMTWPTTMLST*AGDTPASFS-----APTVAIVC 182
P VC E + WP T + + PA A TV +VC
Sbjct: 738 PRVCKEALAWPVTRATKETAECPARLELVERLAQTVDLVC 777
>SB_9403| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 564
Score = 27.5 bits (58), Expect = 9.1
Identities = 18/51 (35%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Frame = +1
Query: 118 SVKGRRLVPSAESSATHPRPNCXXXXXXXXXXXP--ECPRLRSTAWSWAKS 264
S K R VP A +S T P+ P ECPRL SW K+
Sbjct: 354 SFKKRSPVPEALNSPTMTSPHVAMTTPYVINLIPTIECPRLWPKCASWLKT 404
>SB_3115| Best HMM Match : AAA (HMM E-Value=0)
Length = 913
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +2
Query: 215 GRSVPGSGRQHGRGPSHLFITN*RNLH 295
GR VPG GR+ G S+ F++N LH
Sbjct: 70 GRRVPGGGRKGGILGSNPFVSNSYKLH 96
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,975,239
Number of Sequences: 59808
Number of extensions: 391069
Number of successful extensions: 1117
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1111
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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