Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10f05f
(612 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81546-11|CAB04455.2| 394|Caenorhabditis elegans Hypothetical p... 191 4e-49
U41105-4|AAA82397.2| 407|Caenorhabditis elegans 3-ketoacyl-coa ... 95 3e-20
U41105-5|AAA82398.1| 390|Caenorhabditis elegans Hypothetical pr... 89 2e-18
U41105-8|AAA82403.1| 460|Caenorhabditis elegans Hypothetical pr... 81 5e-16
M77697-2|AAA27897.2| 448|Caenorhabditis elegans Hypothetical pr... 66 2e-11
L36035-1|AAA28077.1| 568|Caenorhabditis elegans HSP60 protein. 29 2.6
AC084153-6|AAK84594.1| 568|Caenorhabditis elegans Heat shock pr... 29 2.6
Z81575-1|CAB04628.1| 277|Caenorhabditis elegans Hypothetical pr... 29 3.5
U97405-1|AAB53007.1| 327|Caenorhabditis elegans Hypothetical pr... 29 3.5
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist... 28 6.0
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele... 28 6.0
Z73973-2|CAA98264.1| 277|Caenorhabditis elegans Hypothetical pr... 27 8.0
>Z81546-11|CAB04455.2| 394|Caenorhabditis elegans Hypothetical
protein F53A2.7 protein.
Length = 394
Score = 191 bits (465), Expect = 4e-49
Identities = 92/162 (56%), Positives = 113/162 (69%)
Frame = +3
Query: 126 RTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMVVGQVISSSQTDGIYTPRH 305
RT FGTFGG + SAT+L +A+ ALK A V VD ++ G V++SS+ DGIY RH
Sbjct: 13 RTAFGTFGGKLKGLSATDLGVVASQAALKHANVGADAVDHVIFGNVVASSR-DGIYLSRH 71
Query: 306 AALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAAKISVAGGVENMSQAPFAVRNV 485
LK+G+PQ L +NRLCGSGFQ++VN+AQ I G + I +AGG ENMS PFAVR++
Sbjct: 72 IGLKSGVPQNVGALTVNRLCGSGFQAVVNAAQAIKLGESNIVLAGGTENMSMVPFAVRDI 131
Query: 486 RFGTALGTNYAFEDTLWAGLSDSYCGLPMGMTAEKLGAQFGI 611
RFGTALG Y FED LW LSD Y L MG TAEKLGAQ+ +
Sbjct: 132 RFGTALGKKYEFEDMLWDSLSDPYAKLAMGQTAEKLGAQYKV 173
>U41105-4|AAA82397.2| 407|Caenorhabditis elegans 3-ketoacyl-coa
thiolase protein 1 protein.
Length = 407
Score = 95.5 bits (227), Expect = 3e-20
Identities = 55/162 (33%), Positives = 86/162 (53%)
Frame = +3
Query: 126 RTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMVVGQVISSSQTDGIYTPRH 305
RTP G+F + +A EL ++A AL+ V P+ + + +GQV ++ G R
Sbjct: 31 RTPIGSFRSSLSSVTAPELASVAIKAALERGAVKPSSIQEVFLGQVCQANA--GQAPARQ 88
Query: 306 AALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAAKISVAGGVENMSQAPFAVRNV 485
AAL AG+ V +N++C SG ++I+ +AQ I TG ++ GG+E+MSQ PF V+
Sbjct: 89 AALGAGLDLSVAVTTVNKVCSSGLKAIILAAQQIQTGHQDFAIGGGMESMSQVPFYVQ-- 146
Query: 486 RFGTALGTNYAFEDTLWAGLSDSYCGLPMGMTAEKLGAQFGI 611
R G + + GL+D+Y + MG EK + GI
Sbjct: 147 RGEIPYGGFQVIDGIVKDGLTDAYDKVHMGNCGEKTSKEMGI 188
>U41105-5|AAA82398.1| 390|Caenorhabditis elegans Hypothetical
protein T02G5.7 protein.
Length = 390
Score = 89.0 bits (211), Expect = 2e-18
Identities = 54/164 (32%), Positives = 85/164 (51%), Gaps = 2/164 (1%)
Frame = +3
Query: 126 RTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMVVGQVISSSQTDGIYTPRH 305
RTP G + G F N A EL T+A A++ +GV+P +++ ++ G V+ + + R
Sbjct: 13 RTPIGAYRGSFANFGAVELGTVAAKAAIERSGVAPEKIEEVIGGCVLPAGLGQNV--TRQ 70
Query: 306 AALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAAKISVAGGVENMSQAPFAV--R 479
+L AG+P + +N++C S +++V +A +I G + G ENMSQ PF V
Sbjct: 71 ISLSAGLPVTTQAVTVNKVCSSSMKALVTAAVEIKAGYYDTILVVGTENMSQVPFYVPRG 130
Query: 480 NVRFGTALGTNYAFEDTLWAGLSDSYCGLPMGMTAEKLGAQFGI 611
+ FG T+ +D GL D PMG+ AEK +GI
Sbjct: 131 EIPFGGIQMTDGISKD----GLEDIKEKGPMGLCAEKTVKDYGI 170
>U41105-8|AAA82403.1| 460|Caenorhabditis elegans Hypothetical
protein T02G5.4 protein.
Length = 460
Score = 81.4 bits (192), Expect = 5e-16
Identities = 50/163 (30%), Positives = 84/163 (51%), Gaps = 2/163 (1%)
Frame = +3
Query: 126 RTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVD--SMVVGQVISSSQTDGIYTP 299
RTP G+F + +A EL ++A AL+ V P+ + ++ +GQV ++ G +
Sbjct: 109 RTPIGSFRSSLSSVTAPELASVAIKAALERGAVKPSSIQEANVFLGQVCHANA--GQASA 166
Query: 300 RHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAAKISVAGGVENMSQAPFAVR 479
R AAL AG+ V +N+ SG ++I+ +AQ I TG +++ GG+E+MSQ PF +
Sbjct: 167 RQAALGAGLDLSVAVTTVNKGWSSGMKAIILAAQQIQTGHQDLAIGGGMESMSQVPFFLA 226
Query: 480 NVRFGTALGTNYAFEDTLWAGLSDSYCGLPMGMTAEKLGAQFG 608
V + Y E T+ G+SD + + + E+ G
Sbjct: 227 RVEQSS---NKYQVEQTVQDGISDFFDKQELCINGERTNGNIG 266
>M77697-2|AAA27897.2| 448|Caenorhabditis elegans Hypothetical
protein B0303.3 protein.
Length = 448
Score = 65.7 bits (153), Expect = 2e-11
Identities = 45/132 (34%), Positives = 64/132 (48%), Gaps = 1/132 (0%)
Frame = +3
Query: 126 RTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMVVGQVISSSQTDGIYTPRH 305
RTPF G VF++ A +LQ A +++ + Q+D ++ G VI +T I R
Sbjct: 33 RTPFVVSGTVFKDLMAVDLQKEAIKALVEKTKLPYEQLDHIICGTVIQECKTSNI--ARE 90
Query: 306 AALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAAKISVAGGVENMSQAPFAV-RN 482
AAL AG+P + P + C S ++ + TG A +AGGVE +S P RN
Sbjct: 91 AALLAGVPDKIPAHTVTLACISSNVAMTTGMGMLATGNANAIIAGGVELLSDVPIRYNRN 150
Query: 483 VRFGTALGTNYA 518
R LG N A
Sbjct: 151 AR-KAMLGMNKA 161
>L36035-1|AAA28077.1| 568|Caenorhabditis elegans HSP60 protein.
Length = 568
Score = 29.1 bits (62), Expect = 2.6
Identities = 23/87 (26%), Positives = 38/87 (43%)
Frame = +3
Query: 183 QTIATVGALKEAGVSPAQVDSMVVGQVISSSQTDGIYTPRHAALKAGIPQEKPVLGINRL 362
Q IAT+ +K AG+ P+ + V G +S D + +AGI V+
Sbjct: 465 QPIATI--VKNAGLEPSSIIDEVTGNSNTSYGYDALNGKFVDMFEAGIIDPTKVVRTALQ 522
Query: 363 CGSGFQSIVNSAQDILTGAAKISVAGG 443
SG S++ + + ++T K GG
Sbjct: 523 DASGVASLLATTECVVTEIPKEEAVGG 549
>AC084153-6|AAK84594.1| 568|Caenorhabditis elegans Heat shock
protein protein 60 protein.
Length = 568
Score = 29.1 bits (62), Expect = 2.6
Identities = 23/87 (26%), Positives = 38/87 (43%)
Frame = +3
Query: 183 QTIATVGALKEAGVSPAQVDSMVVGQVISSSQTDGIYTPRHAALKAGIPQEKPVLGINRL 362
Q IAT+ +K AG+ P+ + V G +S D + +AGI V+
Sbjct: 465 QPIATI--VKNAGLEPSSIIDEVTGNSNTSYGYDALNGKFVDMFEAGIIDPTKVVRTALQ 522
Query: 363 CGSGFQSIVNSAQDILTGAAKISVAGG 443
SG S++ + + ++T K GG
Sbjct: 523 DASGVASLLATTECVVTEIPKEEAVGG 549
>Z81575-1|CAB04628.1| 277|Caenorhabditis elegans Hypothetical
protein R08H2.1 protein.
Length = 277
Score = 28.7 bits (61), Expect = 3.5
Identities = 28/102 (27%), Positives = 42/102 (41%), Gaps = 8/102 (7%)
Frame = +3
Query: 183 QTIATVGALKEAGVSPAQVDSMVVGQV-ISSSQTDGIYTPRHAALKAGIPQEKPVLGINR 359
++I G+ G S A + + QV I+ D + R LKAG+P EK +
Sbjct: 7 KSIIITGSSSGIGRSAAVIFAKEGAQVTITGRSADRLEETRLQILKAGVPAEKINAVVAD 66
Query: 360 LC-GSGFQSIVNSAQ------DILTGAAKISVAGGVENMSQA 464
+C SG ++ + DIL A + G N QA
Sbjct: 67 VCEASGQDEVIRTTLAKFGKIDILVNNAGALLTDGTSNTDQA 108
>U97405-1|AAB53007.1| 327|Caenorhabditis elegans Hypothetical
protein T09B4.5a protein.
Length = 327
Score = 28.7 bits (61), Expect = 3.5
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1
Query: 448 RTCRKRPSRSET*GSARLWAPTTPSKTPSGPDSRT 552
+T + S+S T G P TPSKTPS +R+
Sbjct: 55 KTPSRSASKSATRGRTASKTPKTPSKTPSSASARS 89
>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
protein 1 protein.
Length = 1852
Score = 27.9 bits (59), Expect = 6.0
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +1
Query: 466 PSRSET*GSARLWAPTTPSKTPSGP 540
PS SE G++ ++PT+P+ +PS P
Sbjct: 1808 PSPSEQPGTSAQYSPTSPTYSPSSP 1832
>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
RNA polymeraseII largest subunit (ama-1 IV) gene,
complete cds. ).
Length = 1859
Score = 27.9 bits (59), Expect = 6.0
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +1
Query: 466 PSRSET*GSARLWAPTTPSKTPSGP 540
PS SE G++ ++PT+P+ +PS P
Sbjct: 1815 PSPSEQPGTSAQYSPTSPTYSPSSP 1839
>Z73973-2|CAA98264.1| 277|Caenorhabditis elegans Hypothetical
protein F25D1.5 protein.
Length = 277
Score = 27.5 bits (58), Expect = 8.0
Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 8/101 (7%)
Frame = +3
Query: 183 QTIATVGALKEAGVSPAQVDSMVVGQV-ISSSQTDGIYTPRHAALKAGIPQEKPVLGINR 359
+++ G+ G S A + + QV I+ D + + LKAG+P EK +
Sbjct: 7 KSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVAD 66
Query: 360 LC-GSGFQSIVNSAQ------DILTGAAKISVAGGVENMSQ 461
+ SG I+N+ DIL A ++A G N Q
Sbjct: 67 VTEASGQDDIINTTLAKFGKIDILVNNAGANLADGTANTDQ 107
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,624,957
Number of Sequences: 27780
Number of extensions: 286068
Number of successful extensions: 854
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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