Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10f04f
         (637 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5030| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.2  
SB_27653| Best HMM Match : 7tm_1 (HMM E-Value=0)                       27   9.7  

>SB_5030| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 296

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -3

Query: 626 LILYLFLWQY-LIEVVICTRFYNTFISFLYKINKYCSIKYFSN 501
           + +++ LW   L E+++    Y+ F+S  Y I+ +C +  F N
Sbjct: 35  VFMFVMLWTISLFELLVVLPIYHEFLSTWYLIHVFCGLFMFLN 77


>SB_27653| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 416

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
 Frame = -3

Query: 635 SISLILYLFLWQYLIEVVICTRFYNTFISFLYKINKYCSIK---YFSNKAL 492
           S+   L+LF+ QY   +++ T  Y+T I  L++ ++  S +   Y  NKA+
Sbjct: 192 SVHYTLFLFVVQYAAPLLLITVLYSTLIKDLWQSSRTHSDRKRAYKENKAV 242


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,755,372
Number of Sequences: 59808
Number of extensions: 344125
Number of successful extensions: 711
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)