Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10f04f
         (637 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038608-4|AAU05594.2|  310|Caenorhabditis elegans Serpentine re...    30   1.2  
U64845-6|AAC48028.1|  556|Caenorhabditis elegans Hypothetical pr...    29   3.7  

>AF038608-4|AAU05594.2|  310|Caenorhabditis elegans Serpentine
           receptor, class z protein37 protein.
          Length = 310

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -3

Query: 620 LYLFLWQYLIEVVICTRFYNTFISFLYKINKYC 522
           +Y+F WQ ++ VV    F   FIS+LY    YC
Sbjct: 219 IYIF-WQSIVVVVFKIHFIKEFISYLYFDYVYC 250


>U64845-6|AAC48028.1|  556|Caenorhabditis elegans Hypothetical
           protein F45F2.5 protein.
          Length = 556

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 454 KFVMYYNFYSIVYKALLEKYFIEQYLFILYKN 549
           K  + Y+ + ++  A+   YF+  YLF+LY N
Sbjct: 64  KMWLEYSIFCVLMYAVAVAYFLYLYLFVLYPN 95


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,739,981
Number of Sequences: 27780
Number of extensions: 277664
Number of successful extensions: 535
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 535
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)