Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10f03f
(666 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g24440.1 68416.m03067 fibronectin type III domain-containing ... 34 0.098
At2g46020.2 68415.m05725 transcription regulatory protein SNF2, ... 33 0.17
At2g46020.1 68415.m05724 transcription regulatory protein SNF2, ... 33 0.17
At5g46580.1 68418.m05735 pentatricopeptide (PPR) repeat-containi... 31 0.69
At1g09910.1 68414.m01115 expressed protein 30 1.6
At5g27230.1 68418.m03248 expressed protein ; expression support... 29 2.8
At5g40200.1 68418.m04878 DegP protease, putative contains simila... 28 4.9
At2g36305.1 68415.m04456 CAAX amino terminal protease family pro... 28 6.4
At2g24210.1 68415.m02892 myrcene/ocimene synthase (TPS10) nearly... 28 6.4
At3g45530.1 68416.m04917 DC1 domain-containing protein contains ... 27 8.5
At2g39290.1 68415.m04824 phosphatidylglycerolphosphate synthase ... 27 8.5
>At3g24440.1 68416.m03067 fibronectin type III domain-containing
protein contains Pfam profile PF00041: Fibronectin type
III domain
Length = 602
Score = 33.9 bits (74), Expect = 0.098
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Frame = +2
Query: 35 CLNSGWACSRRAQQCSTKAEHHKDKKCGCRIC*KAKENS--VLLPRCEPTK 181
CL S W C + + + E K+C C +C EN L CEP K
Sbjct: 42 CLRSSWICKNASCRANVPKEDSFCKRCSCCVCHNFDENKDPSLWLVCEPEK 92
>At2g46020.2 68415.m05725 transcription regulatory protein SNF2,
putative similar to SP|P22082 Transcription regulatory
protein SNF2 (SWI/SNF complex component SNF2)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 2193
Score = 33.1 bits (72), Expect = 0.17
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = -2
Query: 536 KHFRVYFIRSRNNETVAIRALDNSDVEGIQELTLIEMHTRKTGSLVERFKVLS 378
K R + R + + AL N+DVE +E+ L+E T G ER+ VLS
Sbjct: 828 KMLREFSKRKDDGRNKRMEALKNNDVERYREM-LLEQQTNMPGDAAERYAVLS 879
>At2g46020.1 68415.m05724 transcription regulatory protein SNF2,
putative similar to SP|P22082 Transcription regulatory
protein SNF2 (SWI/SNF complex component SNF2)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 2192
Score = 33.1 bits (72), Expect = 0.17
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = -2
Query: 536 KHFRVYFIRSRNNETVAIRALDNSDVEGIQELTLIEMHTRKTGSLVERFKVLS 378
K R + R + + AL N+DVE +E+ L+E T G ER+ VLS
Sbjct: 828 KMLREFSKRKDDGRNKRMEALKNNDVERYREM-LLEQQTNMPGDAAERYAVLS 879
>At5g46580.1 68418.m05735 pentatricopeptide (PPR) repeat-containing
protein contains similarity to 67kD chloroplastic
RNA-binding protein, P67.1 [Raphanus sativus]
GI:9755886; contains Pfam profile PF01535: PPR repeat
Length = 711
Score = 31.1 bits (67), Expect = 0.69
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 255 KAVEEFLKMYRTGFMPKNLEFSVFYD 332
KA+E F +MY+TG MP + +S D
Sbjct: 239 KAIEWFERMYKTGLMPDEVTYSAILD 264
>At1g09910.1 68414.m01115 expressed protein
Length = 675
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 23 NHEVCLNSGWACSRRAQQCSTKAEHHKDKK 112
NHE LN+G CS Q ++ H KD +
Sbjct: 14 NHETALNAGHHCSEGTDQGTSGLSHRKDHR 43
>At5g27230.1 68418.m03248 expressed protein ; expression supported
by MPSS
Length = 948
Score = 29.1 bits (62), Expect = 2.8
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = +3
Query: 114 VDAVFVEKQKKILSFFQDVSQLNTDDEYYKIGKDYDIEMNMDNYTNKKAVEEFLK 278
V A+ +EK++K L D S E+ K KD+D+E + K+ VE+ K
Sbjct: 69 VKALELEKKEKELCLI-DESMKAKQSEFEKKEKDFDLEQKAEVEKRKREVEQLEK 122
>At5g40200.1 68418.m04878 DegP protease, putative contains
similarity to DegP2 protease GI:13172275 from
[Arabidopsis thaliana]
Length = 592
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 180 NTDDEYYKIGKDYDIEMNMDNYTNKKAVEEFL 275
N +DEY K DYD + +D T K+A + L
Sbjct: 542 NCEDEYMKFNLDYDQIVVLDTKTAKEATLDIL 573
>At2g36305.1 68415.m04456 CAAX amino terminal protease family
protein similar to CAAX prenyl protease 2 (EC 3.4.22.-)
(Prenyl protein-specific endoprotease 2)
(Farnesylated-proteins converting enzyme 2) (FACE-2)
from Mus musculus [SP|P57791], Homo sapiens [SP|Q9Y256],
Drosophila melanogaster [SP|Q9U1H8]; contains Pfam
profile PF02517 CAAX amino terminal protease family
protein
Length = 242
Score = 27.9 bits (59), Expect = 6.4
Identities = 19/37 (51%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -2
Query: 617 ILSCGFRINEAILHLCYVNF-LQHFHIHKHFRVYFIR 510
+L GFRIN AI LC V F L H + HFR +IR
Sbjct: 107 LLCAGFRINTAIF-LCPVLFSLAHLN---HFREMYIR 139
>At2g24210.1 68415.m02892 myrcene/ocimene synthase (TPS10) nearly
identical to GI:9957293; contains Pfam profile: PF01397
terpene synthase family
Length = 591
Score = 27.9 bits (59), Expect = 6.4
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Frame = +3
Query: 132 EKQKKILSFFQD--VSQLNTDDEYYKIGKDYDIEMNMDNYTNKKAVEEFLKMYRTGFMPK 305
EK +K+L+ Q + QL D+ K+G Y E +DN ++ + +
Sbjct: 82 EKVRKMLNDEQKTYLDQLEFIDDLQKLGVSYHFEAEIDNILTSSYKKDRTNIQESDLHAT 141
Query: 306 NLEFSVF 326
LEF +F
Sbjct: 142 ALEFRLF 148
>At3g45530.1 68416.m04917 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 692
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -3
Query: 562 IFCSTSIFINILGYTSYGAGTTKPW 488
++CS + LGYT GA T PW
Sbjct: 640 VYCSCYCVSSQLGYTYKGADTCPPW 664
>At2g39290.1 68415.m04824 phosphatidylglycerolphosphate synthase
(PGS1) identical to phosphatidylglycerolphosphate
synthase GI:13365519 from [Arabidopsis thaliana]
Length = 296
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -1
Query: 186 QCLVGSHLGRRTEFSFAFQQIRHPHFLSLWCSA 88
+C++ S RT F Q RH H LS + S+
Sbjct: 33 RCIITSRYSSRTSLRFPIQISRHQHRLSYFSSS 65
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,239,939
Number of Sequences: 28952
Number of extensions: 260300
Number of successful extensions: 690
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1403159472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -