Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10f02r
         (622 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   3.2  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   3.2  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    23   3.2  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   7.3  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   7.3  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    21   7.3  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    21   7.3  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    21   7.3  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    21   7.3  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   9.7  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = +3

Query: 414 IFPICFLIFN 443
           +FP+CF+ FN
Sbjct: 411 VFPVCFVCFN 420


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = +3

Query: 414 IFPICFLIFN 443
           +FP+CF+ FN
Sbjct: 411 VFPVCFVCFN 420


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = +3

Query: 414 IFPICFLIFN 443
           +FP+CF+ FN
Sbjct: 349 VFPVCFVCFN 358


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = +3

Query: 414 IFPICFLIFN 443
           +FP+ F+IFN
Sbjct: 451 VFPVAFIIFN 460


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +3

Query: 414 IFPICFLIFNSSQLLKY 464
           IFP+ F++FN+   + Y
Sbjct: 471 IFPVSFMLFNAIYWIFY 487


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +1

Query: 1   NKDNNCSKLXPNPDFSLKIXLXIAQHKXN 87
           N +NNC KL  N ++  +I + +  +  N
Sbjct: 99  NYNNNCKKLYYNINYIEQIPIPVPVYYGN 127


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +1

Query: 1   NKDNNCSKLXPNPDFSLKIXLXIAQHKXN 87
           N +NNC KL  N ++  +I + +  +  N
Sbjct: 104 NYNNNCKKLYYNINYIEQIPIPVPVYYGN 132


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +1

Query: 1   NKDNNCSKLXPNPDFSLKIXLXIAQHKXN 87
           N +NNC KL  N ++  +I + +  +  N
Sbjct: 104 NYNNNCKKLYYNINYIEQIPIPVPVYYGN 132


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +1

Query: 1   NKDNNCSKLXPNPDFSLKIXLXIAQHKXN 87
           N +NNC KL  N ++  +I + +  +  N
Sbjct: 104 NYNNNCKKLYYNINYIEQIPIPVPVYYGN 132


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -2

Query: 429 NRLEKYWKRSDIPAKK*L*ITP 364
           N L  +W +SD+   + L  TP
Sbjct: 446 NILNTFWTKSDVDLSRGLDFTP 467


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,387
Number of Sequences: 438
Number of extensions: 2203
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)