Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10f02f
         (595 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27337| Best HMM Match : efhand (HMM E-Value=2.9e-21)                35   0.057
SB_12193| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.075
SB_19134| Best HMM Match : Rab5ip (HMM E-Value=0)                      30   1.6  
SB_26266| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)                 30   1.6  
SB_26916| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_47415| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_23493| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  

>SB_27337| Best HMM Match : efhand (HMM E-Value=2.9e-21)
          Length = 172

 Score = 34.7 bits (76), Expect = 0.057
 Identities = 14/34 (41%), Positives = 23/34 (67%)
 Frame = -1

Query: 112 NQFLYGIKETGLELNKSEAEXLFSQFDTDSSGSI 11
           ++F  G+++ G +L   E + LF+QFD D SGS+
Sbjct: 58  DEFRKGMQDFGTKLTDDEVKQLFAQFDKDGSGSL 91


>SB_12193| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 457

 Score = 34.3 bits (75), Expect = 0.075
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -1

Query: 112 NQFLYGIKETGLELNKSEAEXLFSQFDTDSSGSI 11
           N+F  G+++ G+ L   E +  F  FDTD SG+I
Sbjct: 62  NEFKKGLRDYGVMLEPKEVKRTFEAFDTDGSGTI 95


>SB_19134| Best HMM Match : Rab5ip (HMM E-Value=0)
          Length = 150

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/19 (68%), Positives = 16/19 (84%)
 Frame = +1

Query: 445 ALVPDSVKKELLQKIKTHL 501
           ALVPD VK+ELLQ+I+  L
Sbjct: 128 ALVPDEVKRELLQRIRQFL 146


>SB_26266| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
          Length = 1038

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +1

Query: 346 DQVRMLCRDIVKENESGNITFDSLVTKVTPRARALVPDSVKKELLQKI 489
           D++R   RD  K+ E+    ++ ++TK    A+       KKE+LQ+I
Sbjct: 141 DRLRRTYRDNAKDAENAQKRYEEVITKDKMNAKEWDKSKDKKEILQEI 188


>SB_26916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1732

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 109 QFLYGIKETGLELNKSEAEXLFSQFDTDSSGSI 11
           +F  G+KETGL + K + + L    D ++ G I
Sbjct: 576 EFSKGLKETGLVMTKRQLDRLMEYIDINNDGEI 608


>SB_47415| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 584

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +2

Query: 476 YCRKLKPIYSHRKTNKDKILIKFVLCYF 559
           +C + KPI+S+R+T K K+    V+C F
Sbjct: 129 HCHEFKPIHSNRRTRK-KLTTASVVCLF 155


>SB_23493| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1230

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -3

Query: 488 IFCNNSFFTESGTSALARGVTFVTKESNVMFPLSFSFTMSRHSIL 354
           +  N +F       +L++GVT  T+E+N++        MS HS++
Sbjct: 621 VLVNQAFIDTIHEHSLSQGVTEPTRENNILDLTEVLNGMSNHSVV 665


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,771,858
Number of Sequences: 59808
Number of extensions: 249799
Number of successful extensions: 465
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 465
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)