Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10e24r
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces pom...    46   5e-06
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    28   1.1  
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos...    28   1.5  
SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase comp...    27   2.0  
SPBC646.15c |||Pex16 family protein|Schizosaccharomyces pombe|ch...    25   7.9  
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   7.9  
SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6 |Schi...    25   7.9  

>SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 163

 Score = 46.0 bits (104), Expect = 5e-06
 Identities = 31/141 (21%), Positives = 62/141 (43%), Gaps = 2/141 (1%)
 Frame = -1

Query: 428 RVKDIVFSSAFTLALYVFATFWGLYLIDEDLILPAHIQEVLPNWINHGMHTTIVPFIILE 249
           ++K+I+      L   V   +W +   D  L++P      LP   +  +H     + +++
Sbjct: 17  KLKNILLYIVCPLETIVSILYWSIVSYDRSLLIPKDRPVPLPLNFDISVHLMPTVYTLID 76

Query: 248 LLLTNRNYPTRKVG--LSVTLLINFTYVFWIHYLYFTQGTWVYPFLDLMNWSTRILFCCT 75
            L  +  + +  +G  L V L I  +Y+ W+   Y     + YP L +++   + +F   
Sbjct: 77  YLFFSPPF-SLSIGPSLLVYLSIAVSYMLWVEKCYQMNKFYAYPILAILDPIKKTIFYTV 135

Query: 74  SSIIGVLFYILGENIHYIVTP 12
           +SII    YI+ + +H    P
Sbjct: 136 ASIISFSCYIVLKMVHPYALP 156


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1562

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 320 IQEVLPNWINHGMHTTIVPFII 255
           I +++P W   G +TTI+P +I
Sbjct: 268 IMQMIPGWSTTGTYTTIIPLLI 289


>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 601

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = -3

Query: 360 PVLDRRGPNSAGPHPRGSTKLDKSRDAHNYCTFHHFGASLD 238
           P L  R  +S+   P  ST   KSR A +  T H  G S D
Sbjct: 133 PSLPPRTKSSSQSSPMASTSTSKSRYADSLSTLHDMGFSDD 173


>SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase complex
           beta subunit Qcr1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 457

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 8/77 (10%)
 Frame = -1

Query: 503 YFGTAVLNDIIGT-NATAPKNPPLIRRVKDIVFSSAFTLALYVFAT------FWGLYLID 345
           YF   V+  IIG  +     +P L  R+  IV       +   F+T       WG+YL+ 
Sbjct: 278 YFTALVMQAIIGNWDRAMGASPHLSSRLSTIVQQHQLANSFMSFSTSYSDTGLWGIYLVT 337

Query: 344 EDL-ILPAHIQEVLPNW 297
           E+L  +   +   L NW
Sbjct: 338 ENLGRIDDLVHFTLQNW 354


>SPBC646.15c |||Pex16 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 376

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = +1

Query: 232 LFVKR--SSKMMKGTIVVCIP*FIQFGRTSWMWAGRIRSSSIKYRP 363
           +F KR  + ++    I VC P  + +    W W  + +SSS+K RP
Sbjct: 208 IFTKRLPNLRIFSNFIKVCRP--LIYMLFMWHWKRKQKSSSLKVRP 251


>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 615

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = -1

Query: 620 VIW--YDQQYVEIPLPDGIKNMSFKARGIFL 534
           ++W  Y    + + LPDGI+N+  KA   FL
Sbjct: 210 IVWHLYHSMIISL-LPDGIRNLFLKAISYFL 239


>SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 624

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +3

Query: 210 DFSRWIISVCQEKLQNDERYNS 275
           +   W+I +C E   N+E Y S
Sbjct: 351 NLDNWMIKICYEPCDNEEYYKS 372


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,164,240
Number of Sequences: 5004
Number of extensions: 72008
Number of successful extensions: 231
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)