Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10e24r
(698 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1552 - 27648193-27648307,27648384-27648431,27649140-276492... 40 0.003
03_04_0174 - 18044516-18046327 29 0.14
11_04_0278 + 15711441-15711714,15712272-15712307,15713078-15713283 31 0.67
11_03_0190 - 11350497-11350832,11351926-11352303,11353897-113541... 29 4.7
02_01_0241 + 1595188-1595498,1596621-1596654,1596791-1596979,159... 29 4.7
06_03_1130 - 27826384-27827039,27827800-27828031,27828120-278284... 28 6.2
11_06_0516 + 24502645-24504507 28 8.2
08_02_1570 + 27931057-27931367,27931486-27931550,27931763-279318... 28 8.2
01_06_1261 - 35826513-35828941,35829201-35829294 28 8.2
>07_03_1552 -
27648193-27648307,27648384-27648431,27649140-27649234,
27649311-27649376,27649721-27649810,27650210-27650437,
27650572-27650605,27651106-27651611
Length = 393
Score = 39.5 bits (88), Expect = 0.003
Identities = 26/114 (22%), Positives = 48/114 (42%), Gaps = 1/114 (0%)
Frame = -1
Query: 449 KNPPLIRRVKDIVFSSAFTLALYVFATFWGLYLIDEDLILPAHIQEVLP-NWINHGMHTT 273
K L R I++ ++ + TFWGL ++P ++ + I GMH+
Sbjct: 242 KRAGLWGRCMQIIYQTSAGATMLTDITFWGL-------LVPFFYRDKFGLSLITDGMHSL 294
Query: 272 IVPFIILELLLTNRNYPTRKVGLSVTLLINFTYVFWIHYLYFTQGTWVYPFLDL 111
++++ L N +P ++ V ++ W+ + W YPFLDL
Sbjct: 295 NAVLLLIDTFLNNMPFPWYRLAFFVFWSCSYVTFQWVLHACGAISWWPYPFLDL 348
>03_04_0174 - 18044516-18046327
Length = 603
Score = 29.5 bits (63), Expect(2) = 0.14
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -3
Query: 339 PNSAGPHPRGSTKLDKSRDAHNYCTFHH 256
P+ + P RGST S HN+ +HH
Sbjct: 28 PHKSYPSSRGSTSSPSSHHTHNHTYYHH 55
Score = 23.0 bits (47), Expect(2) = 0.14
Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Frame = -3
Query: 510 NNILRYSSVERHHRHQRYSAKKP--APHQ 430
+ + R S+ HH HQ ++ P PH+
Sbjct: 2 DTLFRLVSLHHHHHHQHAASPSPPDQPHK 30
>11_04_0278 + 15711441-15711714,15712272-15712307,15713078-15713283
Length = 171
Score = 31.5 bits (68), Expect = 0.67
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +3
Query: 102 PVHKVEKWIHPSSLSEIQVMNPKYVRKINKQCHR*SDFSRWIISVCQEKLQN 257
PV WIHP++ SE + + K RK KQ D S + C L++
Sbjct: 37 PVFGATSWIHPTAPSENRALMSKPARKAKKQWCPFDDMSSHSLDGCNVMLKD 88
>11_03_0190 -
11350497-11350832,11351926-11352303,11353897-11354181,
11354515-11355327
Length = 603
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = -1
Query: 497 GTAVLNDIIGTNATAPKNPPLIRRVKDIVFSSAFTLALYVFATFW-GLY 354
GTA L D++ + P P +RR+ ++ +S A AT W G+Y
Sbjct: 47 GTASLPDLVAALSLPPAKLPFLRRLMRLLVNSGVFAAADDTATGWAGMY 95
>02_01_0241 +
1595188-1595498,1596621-1596654,1596791-1596979,
1597956-1598045,1598136-1598201,1598680-1598892
Length = 300
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -1
Query: 539 FLTFWCFALQTIYFGTAVLNDIIGTNATAPKN 444
+ T W F L TIYFG I G + A +N
Sbjct: 101 YYTQWTFILVTIYFGLGTALSIYGCSKLADEN 132
>06_03_1130 - 27826384-27827039,27827800-27828031,27828120-27828491,
27829243-27829449,27829611-27829704,27829806-27829870,
27829946-27830398,27830467-27830760,27830837-27831295,
27831367-27831588,27831755-27831968,27832039-27832494,
27833280-27833389,27833468-27833644,27833758-27833979,
27834048-27834167,27834274-27834383,27834552-27834607,
27835252-27835440,27835602-27835775,27836066-27836281,
27837066-27837106,27837971-27837986,27838330-27838415,
27838737-27838910,27839093-27839149,27839720-27840064,
27840175-27840216,27840377-27840496,27840575-27840724,
27840830-27841534,27841609-27841954,27842978-27843080,
27844817-27844860,27845905-27846101,27846322-27846344,
27846802-27847122,27847406-27847579,27847843-27848047,
27848817-27848880,27850097-27850278,27850291-27850350,
27850688-27850748,27851249-27851313,27851491-27851569,
27851656-27852021,27852442-27852790,27852887-27852989,
27853103-27853373,27854296-27854405,27854515-27854652
Length = 3364
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Frame = -3
Query: 372 HILGPVLDRRGPNSAGPHPRGST---KLDKSRD 283
HI ++D RGP SA P P KLDK+ D
Sbjct: 2426 HISRALIDERGPWSANPFPNDVVTHWKLDKTED 2458
>11_06_0516 + 24502645-24504507
Length = 620
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/47 (23%), Positives = 26/47 (55%)
Frame = +3
Query: 111 KVEKWIHPSSLSEIQVMNPKYVRKINKQCHR*SDFSRWIISVCQEKL 251
K+E H + +++ P ++K++ +C +DF++W+ +KL
Sbjct: 514 KIEASSHQKPIDKMKFALPPNLKKLDLRCFPLTDFAQWVTPKGVKKL 560
>08_02_1570 +
27931057-27931367,27931486-27931550,27931763-27931841,
27931992-27932010,27932091-27932210,27932557-27932626,
27932709-27932752,27932918-27932959,27933033-27933092,
27933413-27933470,27934718-27935376
Length = 508
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = -3
Query: 312 GSTKLDKSRDAHNYCTFHHFGASLDKQKLSNEKSRIICDTA 190
G+ +LD C H A LD +L++ I+ DTA
Sbjct: 412 GTARLDAGEQPPTSCRLLHLPARLDAVELAHHARSILADTA 452
>01_06_1261 - 35826513-35828941,35829201-35829294
Length = 840
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 313 SWMWAGRIRSSSIKYRPQNVANTYKARVNAELKTMSL 423
SW WA IR++ K+ NV + RV A +K + +
Sbjct: 11 SWWWASHIRTTQSKWLDNNV-QEMEIRVKAMIKLIDI 46
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,492,518
Number of Sequences: 37544
Number of extensions: 428891
Number of successful extensions: 1065
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1037
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1064
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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