Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10e24r
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35037| Best HMM Match : Far-17a_AIG1 (HMM E-Value=4.6e-30)          94   9e-20
SB_9858| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.2  
SB_5775| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.7  
SB_6505| Best HMM Match : FA_desaturase (HMM E-Value=1.4e-40)          29   4.8  
SB_38673| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_973| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   6.3  
SB_27030| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  

>SB_35037| Best HMM Match : Far-17a_AIG1 (HMM E-Value=4.6e-30)
          Length = 227

 Score = 94.3 bits (224), Expect = 9e-20
 Identities = 63/211 (29%), Positives = 94/211 (44%), Gaps = 1/211 (0%)
 Frame = -1

Query: 665 TMLLYHLSVVLFNSYVIWYDQQYVEIPLPDGIKNMSFKARGIFLTFWCFALQTIYFGTAV 486
           T L +H S  + +   I Y    V +P         F  R  FLTF     Q ++F   +
Sbjct: 6   TRLFFHYSCSMIHLIGISYHCMEVHLPTYS-----LFGGRFRFLTFINMVWQWLFF--TI 58

Query: 485 LNDIIGTNATAPKNPPLIRRVKDIVFSS-AFTLALYVFATFWGLYLIDEDLILPAHIQEV 309
           L  +     T  +   L+  + D +++   F L + V A FWGL +ID   I      E 
Sbjct: 59  LAVLEFQALTKKRKHELVASLCDFLYAGWTFPLGITVAALFWGLCIIDPHAIQSKEDLEQ 118

Query: 308 LPNWINHGMHTTIVPFIILELLLTNRNYPTRKVGLSVTLLINFTYVFWIHYLYFTQGTWV 129
           +P W+NH MH+     +ILE  L    YPTR  GL     +   Y  W+  ++   G WV
Sbjct: 119 IPLWLNHYMHSFPGLSVILETFLFKHEYPTRSNGLKAVFGLTLGYTAWMVVIFCMGGIWV 178

Query: 128 YPFLDLMNWSTRILFCCTSSIIGVLFYILGE 36
           YPF+  +N    +LF   + ++  + Y LGE
Sbjct: 179 YPFMRKLNILQLVLFFTGAYLLVAVVYFLGE 209


>SB_9858| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 371

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +2

Query: 476 CRSTLLYRSILFVERNTKTSRR 541
           CR T+ YR IL  +RNT  SRR
Sbjct: 307 CRKTVEYRGILLPQRNTSPSRR 328


>SB_5775| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 55

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +3

Query: 417 VFNSSDEGRVFWRCSVG 467
           VF S  EGR+FW C+VG
Sbjct: 36  VFVSCAEGRIFWTCAVG 52


>SB_6505| Best HMM Match : FA_desaturase (HMM E-Value=1.4e-40)
          Length = 361

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 19/35 (54%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
 Frame = -3

Query: 240 DKQKLSNEKSRIICDTAY-*FYVRILDSL-LVFHS 142
           D QKLSN  S IIC+T Y  FY+R+   L L+F S
Sbjct: 55  DNQKLSNALS-IICNTEYNWFYIRLASMLALLFAS 88


>SB_38673| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 99

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -1

Query: 356 YLIDEDLILPAHIQEVLPNWINHGMHTTIVPF 261
           Y  DED+I P+  +E++P+    G  + ++PF
Sbjct: 44  YGADEDIIPPSTTKEIIPDSQEPGTMSPVIPF 75


>SB_973| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1200

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
 Frame = -1

Query: 353 LIDEDLILPAHIQEVLPNWINHGMH---TTIVPFIILELLLTNRNYPTRKVGLSVTLLIN 183
           +ID  +I   +I  ++ N+INH  +   TTI+  II+ + + N N  T    + + ++ N
Sbjct: 47  IIDVIIITIINIITII-NYINHNSNIIITTIIDIIIITITIINNNIITIINIIVIAIIYN 105

Query: 182 FTY 174
             Y
Sbjct: 106 INY 108


>SB_27030| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 306

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = -1

Query: 119 LDLMNWSTRILF-CCTSSII-GVLFYILGENIHYIVT 15
           L+LM W   +LF CCT  I+   +  + G ++ ++VT
Sbjct: 231 LNLMVWIVSLLFICCTPYIVMSAVVMVFGYDVSHVVT 267


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,393,679
Number of Sequences: 59808
Number of extensions: 516472
Number of successful extensions: 1263
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1261
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)