Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10e24r
(698 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g47115.1 68415.m05884 expressed protein 38 0.008
At3g27770.1 68416.m03465 expressed protein 33 0.18
At5g42950.1 68418.m05236 GYF domain-containing protein contains ... 29 2.2
At5g62620.1 68418.m07859 galactosyltransferase family protein co... 29 3.0
At5g22970.1 68418.m02685 expressed protein 29 3.0
At3g61720.1 68416.m06919 C2 domain-containing protein contains I... 28 6.8
At1g70505.1 68414.m08114 expressed protein 28 6.8
At1g68070.1 68414.m07776 zinc finger (C3HC4-type RING finger) fa... 28 6.8
At1g58230.1 68414.m06618 WD-40 repeat family protein / beige-rel... 28 6.8
At5g02360.1 68418.m00159 DC1 domain-containing protein contains ... 27 9.0
At1g34060.1 68414.m04222 alliinase family protein contains Pfam ... 27 9.0
At1g10660.4 68414.m01211 expressed protein 27 9.0
At1g10660.3 68414.m01210 expressed protein 27 9.0
At1g10660.2 68414.m01209 expressed protein 27 9.0
At1g10660.1 68414.m01208 expressed protein 27 9.0
>At2g47115.1 68415.m05884 expressed protein
Length = 300
Score = 37.5 bits (83), Expect = 0.008
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Frame = -1
Query: 284 MHTTIVPFIILELLLTNRNYPTRKVGLSVTLLINFTYVFW-IHYLYFTQGTWVYPFLDLM 108
MHT F++LE LL + +P ++G V + W IH FT W YPFL+L
Sbjct: 200 MHTANAGFLLLETLLNSLPFPWFRMGYFVLWSCLYVIFQWIIHACGFT--WWPYPFLELD 257
Query: 107 NWSTRILFCCTSSI 66
I + C + +
Sbjct: 258 KPWAPIWYLCMAIV 271
>At3g27770.1 68416.m03465 expressed protein
Length = 315
Score = 33.1 bits (72), Expect = 0.18
Identities = 15/70 (21%), Positives = 35/70 (50%)
Frame = -1
Query: 320 IQEVLPNWINHGMHTTIVPFIILELLLTNRNYPTRKVGLSVTLLINFTYVFWIHYLYFTQ 141
+Q+ +++ +HT+ + ++++ L +P + + F WI +++ +
Sbjct: 212 LQDYEMSFMTVNLHTSNLVLLLIDTFLNRLKFPLFRFSYFILWTGCFVLFQWILHMFISV 271
Query: 140 GTWVYPFLDL 111
G W YPFL+L
Sbjct: 272 G-WPYPFLNL 280
>At5g42950.1 68418.m05236 GYF domain-containing protein contains
Pfam profile: PF02213 GYF domain
Length = 1714
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -3
Query: 369 ILGPVLDRRGPNSAGPHPRGSTKLDKSRDAHNYCTF 262
IL V DR P +GP P S + K D H+ TF
Sbjct: 757 ILQGVTDRSSPAVSGPLPAWSQPIQKESDLHHAKTF 792
>At5g62620.1 68418.m07859 galactosyltransferase family protein
contains Pfam profile: PF01762 galactosyltransferase
Length = 681
Score = 29.1 bits (62), Expect = 3.0
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Frame = +1
Query: 307 RTSWMWAGRIRSSSIKYRPQNVANTYKARVNAELKTMSLTLLMRGGFFGAVALVPMM-SF 483
R SWM ++SS + R VA + VN ELK FFG + +VP M S+
Sbjct: 452 RRSWMQHKLVKSSKVVAR-FFVALHSRKEVNVELKK-------EAEFFGDIVIVPYMDSY 503
Query: 484 NTAVPKYI-VCR-AKHQNVKKIPLALND 561
+ V K + +C HQ K + +D
Sbjct: 504 DLVVLKTVAICEYGAHQLAAKFIMKCDD 531
>At5g22970.1 68418.m02685 expressed protein
Length = 137
Score = 29.1 bits (62), Expect = 3.0
Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Frame = +1
Query: 415 MSLTLLMRGGFFGAVALVPMMSFNTA--VPKYIVCRAKHQNVKKIPLALNDMFLMPSGKG 588
M L L R G A L+ T VP ++ CR + K +PL M +PS G
Sbjct: 1 MVLMLFARSGSARAATLIVSNEMQTLPNVPVFVTCRPTPELSKSVPLGQKIMIEIPSIAG 60
>At3g61720.1 68416.m06919 C2 domain-containing protein contains
INTERPRO:IPR000008 C2 domain
Length = 795
Score = 27.9 bits (59), Expect = 6.8
Identities = 7/27 (25%), Positives = 18/27 (66%)
Frame = -1
Query: 200 VTLLINFTYVFWIHYLYFTQGTWVYPF 120
+ L ++F ++FW +Y+Y+ +W+ +
Sbjct: 595 IALGVSFVFLFWEYYIYWLVTSWLVAY 621
>At1g70505.1 68414.m08114 expressed protein
Length = 338
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = -1
Query: 542 IFLTFWCFALQTIYFGTAVLNDI 474
IF T W F L TIYFG L I
Sbjct: 133 IFYTQWTFTLVTIYFGLGSLVSI 155
>At1g68070.1 68414.m07776 zinc finger (C3HC4-type RING finger)
family protein very low similarity to RING-H2 finger
protein RHG1a [Arabidopsis thaliana] GI:3822225;
contains Pfam profile: PF00097 zinc finger, C3HC4 type
(RING finger)
Length = 343
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = -1
Query: 194 LLINFTYVFWIHYLYFTQGTWVYPFLDLMNWSTRI-LFCCTSSIIGVLFYILGE 36
LL N T+++W+ +++ + F ++ I L CC II +L+ + G+
Sbjct: 184 LLQNATHLYWLTFVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIALLYAVAGQ 237
>At1g58230.1 68414.m06618 WD-40 repeat family protein /
beige-related contains Pfam PF00400: WD domain, G-beta
repeat; similar to Lipopolysaccharide-responsive and
beige-like anchor protein (CDC4-like protein)
(Beige-like protein) (SP:P50851) [Homo sapiens}
Length = 1280
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Frame = -3
Query: 372 HILGPVLDRRGPNSAGPHPR---GSTKLDKSRDA 280
H+L ++D RGP SA P P KLD++ D+
Sbjct: 290 HMLRSLMDERGPWSATPFPNNILNRWKLDRTEDS 323
>At5g02360.1 68418.m00159 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 342
Score = 27.5 bits (58), Expect = 9.0
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Frame = +3
Query: 117 EKWIHPSSLSEIQVMNPKYVRKINKQCHR*SDFS-----RWIISVCQEKLQNDERYNSC 278
E +H S + + P YV KI++ HR S S +W VC++ + ND SC
Sbjct: 96 EYMLHSDSFHQDCIYFP-YVIKISRHHHRISYTSSLPSGKWSCGVCRQMVDNDYGAYSC 153
>At1g34060.1 68414.m04222 alliinase family protein contains Pfam
profiles: PF04864 allinase C-terminal domain, PF04863
alliinase EGF-like domain
Length = 463
Score = 27.5 bits (58), Expect = 9.0
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = -1
Query: 218 RKVGLSVTLLINFTYVFWIHYLYFTQGTW 132
+K+ L V++++N VF IH LY++ TW
Sbjct: 4 KKLLLIVSIILNL--VFTIHILYYSSTTW 30
>At1g10660.4 68414.m01211 expressed protein
Length = 320
Score = 27.5 bits (58), Expect = 9.0
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = -1
Query: 572 IKNMSFKARGIFL--TFWCFALQTIYFGTAVLNDIIG 468
I N+ GIF T W F L T+YFG A + + G
Sbjct: 89 ISNVVRDGAGIFYFYTQWTFTLVTLYFGYASVLSVYG 125
>At1g10660.3 68414.m01210 expressed protein
Length = 320
Score = 27.5 bits (58), Expect = 9.0
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = -1
Query: 572 IKNMSFKARGIFL--TFWCFALQTIYFGTAVLNDIIG 468
I N+ GIF T W F L T+YFG A + + G
Sbjct: 89 ISNVVRDGAGIFYFYTQWTFTLVTLYFGYASVLSVYG 125
>At1g10660.2 68414.m01209 expressed protein
Length = 320
Score = 27.5 bits (58), Expect = 9.0
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = -1
Query: 572 IKNMSFKARGIFL--TFWCFALQTIYFGTAVLNDIIG 468
I N+ GIF T W F L T+YFG A + + G
Sbjct: 89 ISNVVRDGAGIFYFYTQWTFTLVTLYFGYASVLSVYG 125
>At1g10660.1 68414.m01208 expressed protein
Length = 320
Score = 27.5 bits (58), Expect = 9.0
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = -1
Query: 572 IKNMSFKARGIFL--TFWCFALQTIYFGTAVLNDIIG 468
I N+ GIF T W F L T+YFG A + + G
Sbjct: 89 ISNVVRDGAGIFYFYTQWTFTLVTLYFGYASVLSVYG 125
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,156,819
Number of Sequences: 28952
Number of extensions: 358326
Number of successful extensions: 980
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 979
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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