Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10e24f
         (593 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35037| Best HMM Match : Far-17a_AIG1 (HMM E-Value=4.6e-30)          84   9e-17
SB_9858| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.93 
SB_5775| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.1  
SB_6505| Best HMM Match : FA_desaturase (HMM E-Value=1.4e-40)          29   3.7  
SB_38673| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_973| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   4.9  
SB_48981| Best HMM Match : 7tm_1 (HMM E-Value=5.7e-25)                 27   8.6  
SB_15461| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_703| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   8.6  

>SB_35037| Best HMM Match : Far-17a_AIG1 (HMM E-Value=4.6e-30)
          Length = 227

 Score = 83.8 bits (198), Expect = 9e-17
 Identities = 56/184 (30%), Positives = 81/184 (44%), Gaps = 1/184 (0%)
 Frame = +1

Query: 34  TMLLYHLSVVLFNSYVIWYDQQYVEIPLPDGIKNMSFKARGIFLTFWCFALQTIYFGTAV 213
           T L +H S  + +   I Y    V +P         F  R  FLTF     Q ++F   +
Sbjct: 6   TRLFFHYSCSMIHLIGISYHCMEVHLPTYS-----LFGGRFRFLTFINMVWQWLFF--TI 58

Query: 214 LNDIIGTNATAPKNPPLIRRVKDIVFSS-AFTLALYVFATFWGLYLIDEDLILPAHIQEV 390
           L  +     T  +   L+  + D +++   F L + V A FWGL +ID   I      E 
Sbjct: 59  LAVLEFQALTKKRKHELVASLCDFLYAGWTFPLGITVAALFWGLCIIDPHAIQSKEDLEQ 118

Query: 391 LPNWINHGMHTTIVPFIILELLLTNRNYPTRKVGLSVTLLINFTYVFWIHYLYFTQGTWV 570
           +P W+NH MH+     +ILE  L    YPTR  GL     +   Y  W+  ++   G WV
Sbjct: 119 IPLWLNHYMHSFPGLSVILETFLFKHEYPTRSNGLKAVFGLTLGYTAWMVVIFCMGGIWV 178

Query: 571 YPFL 582
           YPF+
Sbjct: 179 YPFM 182


>SB_9858| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 371

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = -2

Query: 223 CRSTLLYRSILFVERNTKTSRR 158
           CR T+ YR IL  +RNT  SRR
Sbjct: 307 CRKTVEYRGILLPQRNTSPSRR 328


>SB_5775| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 55

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -3

Query: 282 VFNSSDEGRVFWRCSVG 232
           VF S  EGR+FW C+VG
Sbjct: 36  VFVSCAEGRIFWTCAVG 52


>SB_6505| Best HMM Match : FA_desaturase (HMM E-Value=1.4e-40)
          Length = 361

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 19/35 (54%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
 Frame = +3

Query: 459 DKQKLSNEKSRIICDTAY-*FYVRILDSL-LVFHS 557
           D QKLSN  S IIC+T Y  FY+R+   L L+F S
Sbjct: 55  DNQKLSNALS-IICNTEYNWFYIRLASMLALLFAS 88


>SB_38673| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 99

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +1

Query: 343 YLIDEDLILPAHIQEVLPNWINHGMHTTIVPF 438
           Y  DED+I P+  +E++P+    G  + ++PF
Sbjct: 44  YGADEDIIPPSTTKEIIPDSQEPGTMSPVIPF 75


>SB_973| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1200

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
 Frame = +1

Query: 346 LIDEDLILPAHIQEVLPNWINHGMH---TTIVPFIILELLLTNRNYPTRKVGLSVTLLIN 516
           +ID  +I   +I  ++ N+INH  +   TTI+  II+ + + N N  T    + + ++ N
Sbjct: 47  IIDVIIITIINIITII-NYINHNSNIIITTIIDIIIITITIINNNIITIINIIVIAIIYN 105

Query: 517 FTY 525
             Y
Sbjct: 106 INY 108


>SB_48981| Best HMM Match : 7tm_1 (HMM E-Value=5.7e-25)
          Length = 471

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 7/13 (53%), Positives = 12/13 (92%)
 Frame = -3

Query: 432 YNSCVHPVIYPVW 394
           +NSCV+P++Y +W
Sbjct: 367 FNSCVNPIVYALW 379


>SB_15461| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 450

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 7/13 (53%), Positives = 12/13 (92%)
 Frame = -3

Query: 432 YNSCVHPVIYPVW 394
           +NSCV+P++Y +W
Sbjct: 271 FNSCVNPIVYALW 283


>SB_703| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 506

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 24/87 (27%), Positives = 35/87 (40%)
 Frame = +1

Query: 154 GIFLTFWCFALQTIYFGTAVLNDIIGTNATAPKNPPLIRRVKDIVFSSAFTLALYVFATF 333
           G FL  +C+  Q +Y   +V+  I+G       N  L  +V   +    FTL  Y  A F
Sbjct: 64  GKFLRLYCWIFQKLYLPASVIGGIVGLVILQLAN--LDPQVSGFI-KRNFTLGWYNLAGF 120

Query: 334 WGLYLIDEDLILPAHIQEVLPNWINHG 414
             + ++   L L   I  V   W   G
Sbjct: 121 L-INIVFSSLFLGTKIPNVKVIWNQAG 146


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,947,851
Number of Sequences: 59808
Number of extensions: 431310
Number of successful extensions: 1095
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1093
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)