Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10e24f
         (593 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g47115.1 68415.m05884 expressed protein                             37   0.012
At3g27770.1 68416.m03465 expressed protein                             33   0.14 
At5g42950.1 68418.m05236 GYF domain-containing protein contains ...    29   1.8  
At5g62620.1 68418.m07859 galactosyltransferase family protein co...    29   2.3  
At5g22970.1 68418.m02685 expressed protein                             29   2.3  
At3g61720.1 68416.m06919 C2 domain-containing protein contains I...    28   5.4  
At1g70505.1 68414.m08114 expressed protein                             28   5.4  
At1g58230.1 68414.m06618 WD-40 repeat family protein / beige-rel...    28   5.4  
At5g02360.1 68418.m00159 DC1 domain-containing protein contains ...    27   7.1  
At1g34060.1 68414.m04222 alliinase family protein contains Pfam ...    27   7.1  
At1g10660.4 68414.m01211 expressed protein                             27   7.1  
At1g10660.3 68414.m01210 expressed protein                             27   7.1  
At1g10660.2 68414.m01209 expressed protein                             27   7.1  
At1g10660.1 68414.m01208 expressed protein                             27   7.1  
At5g62960.1 68418.m07899 expressed protein                             27   9.4  
At4g04970.1 68417.m00722 callose synthase, putative / 1,3-beta-g...    27   9.4  

>At2g47115.1 68415.m05884 expressed protein
          Length = 300

 Score = 36.7 bits (81), Expect = 0.012
 Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = +1

Query: 415 MHTTIVPFIILELLLTNRNYPTRKVGLSVTLLINFTYVFW-IHYLYFTQGTWVYPFLDL 588
           MHT    F++LE LL +  +P  ++G  V     +    W IH   FT   W YPFL+L
Sbjct: 200 MHTANAGFLLLETLLNSLPFPWFRMGYFVLWSCLYVIFQWIIHACGFT--WWPYPFLEL 256


>At3g27770.1 68416.m03465 expressed protein
          Length = 315

 Score = 33.1 bits (72), Expect = 0.14
 Identities = 15/70 (21%), Positives = 35/70 (50%)
 Frame = +1

Query: 379 IQEVLPNWINHGMHTTIVPFIILELLLTNRNYPTRKVGLSVTLLINFTYVFWIHYLYFTQ 558
           +Q+   +++   +HT+ +  ++++  L    +P  +    +     F    WI +++ + 
Sbjct: 212 LQDYEMSFMTVNLHTSNLVLLLIDTFLNRLKFPLFRFSYFILWTGCFVLFQWILHMFISV 271

Query: 559 GTWVYPFLDL 588
           G W YPFL+L
Sbjct: 272 G-WPYPFLNL 280


>At5g42950.1 68418.m05236 GYF domain-containing protein contains
           Pfam profile: PF02213 GYF domain
          Length = 1714

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = +3

Query: 330 ILGPVLDRRGPNSAGPHPRGSTKLDKSRDAHNYCTF 437
           IL  V DR  P  +GP P  S  + K  D H+  TF
Sbjct: 757 ILQGVTDRSSPAVSGPLPAWSQPIQKESDLHHAKTF 792


>At5g62620.1 68418.m07859 galactosyltransferase family protein
           contains Pfam profile: PF01762 galactosyltransferase
          Length = 681

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
 Frame = -1

Query: 392 RTSWMWAGRIRSSSIKYRPQNVANTYKARVNAELKTMSLTLLMRGGFFGAVALVPMM-SF 216
           R SWM    ++SS +  R   VA   +  VN ELK           FFG + +VP M S+
Sbjct: 452 RRSWMQHKLVKSSKVVAR-FFVALHSRKEVNVELKK-------EAEFFGDIVIVPYMDSY 503

Query: 215 NTAVPKYI-VCR-AKHQNVKKIPLALND 138
           +  V K + +C    HQ   K  +  +D
Sbjct: 504 DLVVLKTVAICEYGAHQLAAKFIMKCDD 531


>At5g22970.1 68418.m02685 expressed protein 
          Length = 137

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
 Frame = -1

Query: 284 MSLTLLMRGGFFGAVALVPMMSFNTA--VPKYIVCRAKHQNVKKIPLALNDMFLMPSGKG 111
           M L L  R G   A  L+      T   VP ++ CR   +  K +PL    M  +PS  G
Sbjct: 1   MVLMLFARSGSARAATLIVSNEMQTLPNVPVFVTCRPTPELSKSVPLGQKIMIEIPSIAG 60


>At3g61720.1 68416.m06919 C2 domain-containing protein contains
           INTERPRO:IPR000008 C2 domain
          Length = 795

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 7/27 (25%), Positives = 18/27 (66%)
 Frame = +1

Query: 499 VTLLINFTYVFWIHYLYFTQGTWVYPF 579
           + L ++F ++FW +Y+Y+   +W+  +
Sbjct: 595 IALGVSFVFLFWEYYIYWLVTSWLVAY 621


>At1g70505.1 68414.m08114 expressed protein
          Length = 338

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/23 (56%), Positives = 13/23 (56%)
 Frame = +1

Query: 157 IFLTFWCFALQTIYFGTAVLNDI 225
           IF T W F L TIYFG   L  I
Sbjct: 133 IFYTQWTFTLVTIYFGLGSLVSI 155


>At1g58230.1 68414.m06618 WD-40 repeat family protein /
           beige-related contains Pfam PF00400: WD domain, G-beta
           repeat; similar to Lipopolysaccharide-responsive and
           beige-like anchor protein (CDC4-like protein)
           (Beige-like protein) (SP:P50851) [Homo sapiens}
          Length = 1280

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
 Frame = +3

Query: 327 HILGPVLDRRGPNSAGPHPR---GSTKLDKSRDA 419
           H+L  ++D RGP SA P P       KLD++ D+
Sbjct: 290 HMLRSLMDERGPWSATPFPNNILNRWKLDRTEDS 323


>At5g02360.1 68418.m00159 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 342

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
 Frame = -3

Query: 582 EKWIHPSSLSEIQVMNPKYVRKINKQCHR*SDFS-----RWIISVCQEKLQNDERYNSC 421
           E  +H  S  +  +  P YV KI++  HR S  S     +W   VC++ + ND    SC
Sbjct: 96  EYMLHSDSFHQDCIYFP-YVIKISRHHHRISYTSSLPSGKWSCGVCRQMVDNDYGAYSC 153


>At1g34060.1 68414.m04222 alliinase family protein contains Pfam
           profiles: PF04864 allinase C-terminal domain, PF04863
           alliinase EGF-like domain
          Length = 463

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +1

Query: 481 RKVGLSVTLLINFTYVFWIHYLYFTQGTW 567
           +K+ L V++++N   VF IH LY++  TW
Sbjct: 4   KKLLLIVSIILNL--VFTIHILYYSSTTW 30


>At1g10660.4 68414.m01211 expressed protein
          Length = 320

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = +1

Query: 127 IKNMSFKARGIFL--TFWCFALQTIYFGTAVLNDIIG 231
           I N+     GIF   T W F L T+YFG A +  + G
Sbjct: 89  ISNVVRDGAGIFYFYTQWTFTLVTLYFGYASVLSVYG 125


>At1g10660.3 68414.m01210 expressed protein
          Length = 320

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = +1

Query: 127 IKNMSFKARGIFL--TFWCFALQTIYFGTAVLNDIIG 231
           I N+     GIF   T W F L T+YFG A +  + G
Sbjct: 89  ISNVVRDGAGIFYFYTQWTFTLVTLYFGYASVLSVYG 125


>At1g10660.2 68414.m01209 expressed protein
          Length = 320

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = +1

Query: 127 IKNMSFKARGIFL--TFWCFALQTIYFGTAVLNDIIG 231
           I N+     GIF   T W F L T+YFG A +  + G
Sbjct: 89  ISNVVRDGAGIFYFYTQWTFTLVTLYFGYASVLSVYG 125


>At1g10660.1 68414.m01208 expressed protein
          Length = 320

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = +1

Query: 127 IKNMSFKARGIFL--TFWCFALQTIYFGTAVLNDIIG 231
           I N+     GIF   T W F L T+YFG A +  + G
Sbjct: 89  ISNVVRDGAGIFYFYTQWTFTLVTLYFGYASVLSVYG 125


>At5g62960.1 68418.m07899 expressed protein
          Length = 347

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
 Frame = +1

Query: 361 LILP-AHIQEVLPNWINHGMHTTIVPFIILELLLTNRNYPTRKVGLSVTLLINFTYVFW- 534
           +I+P   I +   N +   MH+    F++ +  L + ++P  ++       I +    W 
Sbjct: 226 IIVPFLEIHDYSLNVLVINMHSLNAIFLLGDAALNSLSFPCFRIAYFFFWTIAYVIFQWA 285

Query: 535 IHYLYFTQGTWVYPFLDL 588
           +H L      W YPFLDL
Sbjct: 286 LHSLVHIW--WPYPFLDL 301


>At4g04970.1 68417.m00722 callose synthase, putative /
           1,3-beta-glucan synthase, putative similar to callose
           synthase 1 catalytic subunit GI:13649388 from
           [Arabidopsis thaliana]
          Length = 1768

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 40/163 (24%), Positives = 69/163 (42%), Gaps = 1/163 (0%)
 Frame = +1

Query: 52  LSVVLFNSYVIWYDQQYVEIPLPDGIKNMSFKARGIFLTFWCFALQTIYFGTAVLNDIIG 231
           + V L   ++ W   + ++  L D     S  +R    T+W F   T+ F  AV   ++ 
Sbjct: 336 VEVALLTVFISWAGLRLLQSVL-DASTQYSLVSRE---TYWLFIRLTLKFVVAVAWTVLF 391

Query: 232 TNATAPKNPPLIRRVKDIVFSSAFTLALYVFATFWGLYLIDEDLILPAHIQEVLPNWINH 411
           +   A       ++ KD V+S A    +  F     +Y+I E L L   I   + NW+  
Sbjct: 392 SVFYARI---WSQKNKDGVWSRAANERVVTFLKVVFVYVIPELLALVLFIVPCIRNWVEE 448

Query: 412 GMHTTIVPFIILELLLTNRNYPTRKVGLSVTLLINFTY-VFWI 537
            ++  +V F  L     ++ +  R  G+   L+ N  Y +FWI
Sbjct: 449 -LNLGVVYF--LTWWFYSKTFVGR--GMREGLVDNVKYTLFWI 486


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,774,226
Number of Sequences: 28952
Number of extensions: 299871
Number of successful extensions: 840
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 840
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)