Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10e23f
         (586 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    25   0.41 
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   2.2  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   3.9  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    21   8.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.9  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 25.4 bits (53), Expect = 0.41
 Identities = 17/57 (29%), Positives = 29/57 (50%)
 Frame = +3

Query: 132 QDLEDKLYNSILTGDYDSAVRKSLEYESQGQGSIVQNVVNNLIIDKRRNTMEYCYKL 302
           ++ E ++ ++IL G YD+ +R S E  + G   +  N+    I      TMEY  +L
Sbjct: 29  REKEKEVLDNIL-GGYDARIRPSGENATDGPAVVRVNIFVRSISKIDDVTMEYSVQL 84


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = +3

Query: 132 QDLEDKLYNSILTGDYDSAVRKSLEYESQGQGSIVQNVVNNLIIDKRRNTMEYCYKL 302
           ++ E ++ ++IL G YD+ +R S E  + G   +  N+    I       MEY  +L
Sbjct: 29  REKEKEVLDNIL-GGYDARIRPSGENATDGPAIVRVNLFVRSIATISDIKMEYSVQL 84


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +3

Query: 27  KAPNKMKLLVVFAMCVLAASAGVVELSADSMSPSNQ 134
           KAP ++ + V+     L+ASA V+ LS+ S++   Q
Sbjct: 174 KAPAQIPVDVLVLTVTLSASAMVLGLSSYSLTEFQQ 209



 Score = 21.0 bits (42), Expect = 8.9
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -1

Query: 109 ADSSTTPALAASTHIANTTRSFI 41
           A+   +  +A   HI+N T SF+
Sbjct: 396 ANKMESSGMAGRVHISNATLSFL 418


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -1

Query: 91  PALAASTHIANTTRSFILLGAFSDRSQDCN 2
           P  A++TH A+     I +G F+D     N
Sbjct: 337 PVGASATHGASGIWGIIAIGLFADNPYPLN 366


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 462  DGVDKHTELVSWK 500
            D +D+HT  V+WK
Sbjct: 986  DDLDQHTLKVTWK 998


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,781
Number of Sequences: 438
Number of extensions: 3076
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16993167
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)