Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10e21r
         (700 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g02190.2 68414.m00150 CER1 protein, putative similar to CER1 ...    31   0.73 
At1g02190.1 68414.m00149 CER1 protein, putative similar to CER1 ...    31   0.73 
At3g13530.1 68416.m01701 MAP3K epsilon protein kinase identical ...    31   0.97 
At3g03480.1 68416.m00346 transferase family protein similar to h...    31   0.97 
At1g10760.1 68414.m01231 starch excess protein (SEX1) identical ...    29   3.0  
At4g13390.1 68417.m02092 proline-rich extensin-like family prote...    29   3.9  
At5g14580.1 68418.m01710 polyribonucleotide nucleotidyltransfera...    28   5.2  
At5g06630.1 68418.m00749 proline-rich extensin-like family prote...    28   5.2  
At4g18030.1 68417.m02684 dehydration-responsive family protein s...    28   6.8  
At3g28550.1 68416.m03565 proline-rich extensin-like family prote...    28   6.8  
At3g07980.1 68416.m00975 protein kinase, putative similar to MAP...    28   6.8  
At1g23720.1 68414.m02994 proline-rich extensin-like family prote...    28   6.8  
At5g45190.1 68418.m05547 cyclin family protein similar to cyclin...    27   9.0  

>At1g02190.2 68414.m00150 CER1 protein, putative similar to CER1
           GI:1199467 and maize gl1 homolog (glossy1 locus)
           GI:1209703 from [Arabidopsis thaliana]
          Length = 623

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -2

Query: 219 TNHSVIHSIAPFFLSTSNNLTCS-SRRSWSTMKENYSPIYLTFLTIH 82
           TN+S+   I  F   T++NLT S   RS    +E+   I+LT LT H
Sbjct: 257 TNYSLFMPIYDFIYGTTDNLTDSLYERSLEIEEESPDVIHLTHLTTH 303


>At1g02190.1 68414.m00149 CER1 protein, putative similar to CER1
           GI:1199467 and maize gl1 homolog (glossy1 locus)
           GI:1209703 from [Arabidopsis thaliana]
          Length = 627

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -2

Query: 219 TNHSVIHSIAPFFLSTSNNLTCS-SRRSWSTMKENYSPIYLTFLTIH 82
           TN+S+   I  F   T++NLT S   RS    +E+   I+LT LT H
Sbjct: 257 TNYSLFMPIYDFIYGTTDNLTDSLYERSLEIEEESPDVIHLTHLTTH 303


>At3g13530.1 68416.m01701 MAP3K epsilon protein kinase identical to
           MAP3K epsilon protein kinase [Arabidopsis thaliana]
           gi|3549652|emb|CAA12272
          Length = 1368

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +3

Query: 249 DSLGVGSYG*TNTNSWKGNPSYVPLGSISLEGIVSEELN 365
           D +G G+YG         N  +V +  +SLE IV E+LN
Sbjct: 24  DEIGKGAYGRVYKGLDLENGDFVAIKQVSLENIVQEDLN 62


>At3g03480.1 68416.m00346 transferase family protein similar to
           hypersensitivity-related gene GB:CAA64636 [Nicotiana
           tabacum]; contains Pfam transferase family domain
           PF00248
          Length = 454

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
 Frame = -1

Query: 346 MPSRLMLPKGTYDGFPFQLF----VFVYPYEPTPKESEPFKSVVPDNKPFGYPFDRPVLP 179
           M  ++ LP+ T  G  F++       V P +PTP+E +P  S + D +  G  F  PV+ 
Sbjct: 1   MDHQVSLPQSTTTGLSFKVHRQQRELVTPAKPTPRELKPL-SDIDDQQ--GLRFQIPVI- 56

Query: 178 QYFKQPNM 155
            +F +PN+
Sbjct: 57  -FFYRPNL 63


>At1g10760.1 68414.m01231 starch excess protein (SEX1) identical to
            SEX1 [Arabidopsis thaliana] GI:12044358; supporting cDNA
            gi|12044357|gb|AF312027.1|AF312027
          Length = 1399

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = +3

Query: 228  TTDLNGSDSLGVGSYG*TNTNSWKGNPSYVPLGSISLEGIVSEELNMSV 374
            T+DL G+ S  +G Y      SW G P+ V L     E ++SE+ N +V
Sbjct: 1089 TSDLVGAKSRNIG-YLKGKVPSWVGIPTSVALPFGVFEKVISEKANQAV 1136


>At4g13390.1 68417.m02092 proline-rich extensin-like family protein
           contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 429

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 25/98 (25%), Positives = 37/98 (37%), Gaps = 1/98 (1%)
 Frame = -1

Query: 376 PTDMFNSSDTMPSRLMLPKGTYDGFPFQLFVFVYPYEPTPKESEPFKSVVPDNKPFGYPF 197
           P  ++NS    P     P   Y   P     +VY   P P    PF  V   + P  Y +
Sbjct: 342 PPYVYNSPPPPPYYSPSPTVNYKSPPPP---YVYNSPPPPPYYSPFPKVEYKSPPPPYIY 398

Query: 196 DRPVLPQYFK-QPNMFFKKVLVYHEGELFPYLFNIPHY 86
           + P  P Y+   P + +K           PY++  P+Y
Sbjct: 399 NSPPPPPYYSPSPKITYKSPPP-------PYIYKTPYY 429


>At5g14580.1 68418.m01710 polyribonucleotide nucleotidyltransferase,
           putative similar to Swiss-Prot:P05055 polyribonucleotide
           nucleotidyltransferase (EC 2.7.7.8) (Polynucleotide
           phosphorylase) (PNPase) [Escherichia coli]
          Length = 991

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -2

Query: 204 IHSIAPFFLSTSNNLTCSSRRSWSTMKENYS 112
           + S++P   ST++NL   S+   STMKEN S
Sbjct: 877 LKSVSPKNNSTASNLVSFSKAKKSTMKENLS 907


>At5g06630.1 68418.m00749 proline-rich extensin-like family protein
           contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 440

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = -1

Query: 283 FVYPYEPTPKESEPFKSVVPDNKPFGYPFDRPVLPQYFKQPNMFFK 146
           +VY   P P  S P   V   + P  Y +  P  P Y   PN+++K
Sbjct: 308 YVYSSPPPPYYS-PSPKVYYKSPPPPYVYSSPPPPYYSPSPNVYYK 352


>At4g18030.1 68417.m02684 dehydration-responsive family protein
           similar to early-responsive to dehydration stress ERD3
           protein [Arabidopsis thaliana] GI:15320410; contains
           Pfam profile PF03141: Putative methyltransferase
          Length = 621

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/54 (27%), Positives = 23/54 (42%)
 Frame = -1

Query: 280 VYPYEPTPKESEPFKSVVPDNKPFGYPFDRPVLPQYFKQPNMFFKKVLVYHEGE 119
           +Y     P ++E  + +VP  K +  PF  P    Y    N  FK + V   G+
Sbjct: 113 IYRERHCPPDNEKLRCLVPAPKGYMTPFPWPKSRDYVHYANAPFKSLTVEKAGQ 166


>At3g28550.1 68416.m03565 proline-rich extensin-like family protein
           contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 1018

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = -1

Query: 283 FVYPYEPTPKESEPFKSVVPDNKPFGYPFDRPVLPQYFKQPNMFFK 146
           +VY   P P  S P   VV  + P  Y +  P  P Y   P +++K
Sbjct: 567 YVYSSPPPPYYS-PSPKVVYKSPPPPYVYSSPPPPYYSPSPKVYYK 611


>At3g07980.1 68416.m00975 protein kinase, putative similar to MAP3K
           epsilon protein kinase [Arabidopsis thaliana]
           gi|3549652|emb|CAA12272
          Length = 1367

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 249 DSLGVGSYG*TNTNSWKGNPSYVPLGSISLEGIVSEELN 365
           D +G G+YG         N  +V +  +SLE I  E+LN
Sbjct: 24  DEIGKGAYGRVYIGLDLENGDFVAIKQVSLENIGQEDLN 62


>At1g23720.1 68414.m02994 proline-rich extensin-like family protein
           contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 895

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 22/77 (28%), Positives = 27/77 (35%)
 Frame = -1

Query: 376 PTDMFNSSDTMPSRLMLPKGTYDGFPFQLFVFVYPYEPTPKESEPFKSVVPDNKPFGYPF 197
           P     SS   P     PK TY   P     +VY   P P    P   V   + P  Y +
Sbjct: 710 PPPYVYSSPPPPYYSPSPKPTYKSPPPP---YVYSSPPPPPYYSPSPKVEYKSPPPPYVY 766

Query: 196 DRPVLPQYFKQPNMFFK 146
             P  P Y   P + +K
Sbjct: 767 SSPPPPYYSPSPKVEYK 783



 Score = 27.5 bits (58), Expect = 9.0
 Identities = 30/102 (29%), Positives = 38/102 (37%), Gaps = 3/102 (2%)
 Frame = -1

Query: 376 PTDMFNSSDTMPSRLMLPKGTYDGFPFQLFVFVYPYEPTPKESEPFKSVVPDNKPFGYPF 197
           P     SS   P     PK TY   P     +VY   P P  S P   VV  + P  Y +
Sbjct: 433 PPPYVYSSPPPPYYSPSPKLTYKSSPPP---YVYSSPPPPYYS-PSPKVVYKSPPPPYVY 488

Query: 196 DRPVLPQYFKQPNMFFKKVLVYHEGELFPYLFNI---PHYTP 80
             P  P Y   P   +K           PY++N    P+Y+P
Sbjct: 489 SSPPPPYYSPSPKPSYKSPPP-------PYVYNSPPPPYYSP 523


>At5g45190.1 68418.m05547 cyclin family protein similar to cyclin T1
           [Equus caballus] GI:5052355; contains Pfam profile
           PF00134: Cyclin, N-terminal domain
          Length = 579

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 22/60 (36%), Positives = 29/60 (48%)
 Frame = -1

Query: 646 HKPFTVTIDIKSDVATNAVVKMFLGPKYDENGFPFSLEDNWMNFYELDWFVQKVNPGQSQ 467
           H+ F      K+D  T A V MFL  K +E   P  L+D     YE+   + K +PG SQ
Sbjct: 89  HRFFFRQSHAKNDRRTIATVCMFLAGKVEET--PRPLKDVIFVSYEI---INKKDPGASQ 143


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,940,943
Number of Sequences: 28952
Number of extensions: 294467
Number of successful extensions: 1078
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1065
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)