Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10e18r
(781 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription te... 31 0.24
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa... 29 0.99
SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine decarboxylase|Schizo... 27 2.3
SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr ... 27 4.0
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po... 26 7.0
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po... 26 7.0
SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces po... 25 9.2
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 25 9.2
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 25 9.2
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces... 25 9.2
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo... 25 9.2
SPCC1235.07 |fta7|sma7, cnl3|Sim4 and Mal2 associated |Schizosac... 25 9.2
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc... 25 9.2
>SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription
termination factor Reb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 504
Score = 30.7 bits (66), Expect = 0.24
Identities = 15/61 (24%), Positives = 30/61 (49%)
Frame = -2
Query: 612 SIIQNVVNNLIIDKSRNTMEYCYKLWVGNGQHIVRKYFPYNFRLIMAGNFVKLIYRNYNL 433
+II V+N I+D+ + ++C ++W G +R ++ N ++ K IY +
Sbjct: 247 AIISQEVHNFIMDQGWSEYQFCNQIWAGKCPKTIRMFYS-NLYKKLSHRDAKSIYHHVRR 305
Query: 432 A 430
A
Sbjct: 306 A 306
>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 889
Score = 28.7 bits (61), Expect = 0.99
Identities = 21/78 (26%), Positives = 32/78 (41%)
Frame = -2
Query: 741 EMSAGSMSSSNKELEEKLYNSIXTGDYDSAVRQSLEYENQGKGSIIQNVVNNLIIDKSRN 562
EM S N LE D D R ++ + Q +++++ NL I + N
Sbjct: 404 EMGYTQKSIENDMLESFQKGVFRINDLDCLGRTNV-IQYQISRLVLKDIFFNLQIGVTFN 462
Query: 561 TMEYCYKLWVGNGQHIVR 508
+EY LW NG I +
Sbjct: 463 ILEYLRHLWSNNGDAIAK 480
>SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine
decarboxylase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 437
Score = 27.5 bits (58), Expect = 2.3
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +1
Query: 547 AVLHGVPTLVNDQVVNYILDDGALALVLVFQALTDSAVVV 666
++LHG P L D+V N+ L +VLVF+A D +V
Sbjct: 381 SILHGHPLLRGDEVGNFELGS---TVVLVFEAPADFEFLV 417
>SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 255
Score = 26.6 bits (56), Expect = 4.0
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = -2
Query: 768 VLAVSAGVTEMSAGSMSSSNKELEEKLYNSIXTGDYDSAVRQSLEYENQGKGSII 604
V+ +AG+ + S+ N+++ K+ G Y +A ++ QGKGS+I
Sbjct: 91 VMIANAGIA-IPHLSLEDKNEDIWTKVVGINLNGAYYTAQAAGHHFKKQGKGSLI 144
>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 25.8 bits (54), Expect = 7.0
Identities = 10/30 (33%), Positives = 21/30 (70%)
Frame = -2
Query: 171 KYENDVLFFIYNREYNDALKLGRIVDASGD 82
+ NDV + ++++ N+ K+G++VDA G+
Sbjct: 339 RVNNDVEAYQWSQKENEWKKIGQVVDAVGN 368
>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1159
Score = 25.8 bits (54), Expect = 7.0
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -3
Query: 566 GTPWSTATSCGSATDSTLSESTSP 495
GT A S GSAT T SE T+P
Sbjct: 927 GTSNKPAFSFGSATSKTTSEGTAP 950
>SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 481
Score = 25.4 bits (53), Expect = 9.2
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -2
Query: 558 MEYCYKLWVGNGQHIVRKYFPY 493
+EYC +L V G H++ + + Y
Sbjct: 140 LEYCLRLLVNYGDHVLTEKYTY 161
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 25.4 bits (53), Expect = 9.2
Identities = 17/67 (25%), Positives = 33/67 (49%)
Frame = +1
Query: 508 SDNVLSVADPQLVAVLHGVPTLVNDQVVNYILDDGALALVLVFQALTDSAVVVTGXDAVV 687
S + VA PQ + +L +PT ++ + ++ +LA +L + V +TG + +
Sbjct: 2936 STGITLVAAPQSL-ILQDLPTAISALKITHVDLTPSLASILTPKTAPLLRVFITGGEQIK 2994
Query: 688 QFLLEFF 708
Q LL +
Sbjct: 2995 QELLNIW 3001
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1428
Score = 25.4 bits (53), Expect = 9.2
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +1
Query: 472 GHDESKVIGEVLSDNVLSVADPQLVAVLHGVPTLVNDQ 585
G++E +IG + + + + L+ V GVPTL+ Q
Sbjct: 1013 GNEEKPIIGGIEFSSGMGLLHTALLGVYAGVPTLLIKQ 1050
>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 995
Score = 25.4 bits (53), Expect = 9.2
Identities = 22/67 (32%), Positives = 30/67 (44%)
Frame = +2
Query: 179 WRNHCSLVVSAVLVPNITRS*VLQSVVELSFKYWLYLVLWILKYTLLFSHKVMNFQLMRS 358
+RNH SL S P S S ++ +Y L L W YTL++ L+R
Sbjct: 724 YRNHNSLG-SISQEPYRWESVAESSRCAMNIRYSL-LPYW---YTLMYEASSQGLPLIRP 778
Query: 359 LFFSLPS 379
LFF P+
Sbjct: 779 LFFEFPN 785
>SPBC32C12.02 |ste11|aff1, stex|transcription factor
Ste11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 468
Score = 25.4 bits (53), Expect = 9.2
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +2
Query: 11 KGVTNQEKMSGRPATSPSCPNAIRSPE 91
K +++ + RP+T PSCPNA SP+
Sbjct: 291 KVLSHCSPIDARPST-PSCPNASISPK 316
>SPCC1235.07 |fta7|sma7, cnl3|Sim4 and Mal2 associated
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 244
Score = 25.4 bits (53), Expect = 9.2
Identities = 15/54 (27%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Frame = -2
Query: 717 SSNKELEEKLYNSIXTGDYDSAVRQSLEYEN---QGKGSIIQNVVNNLIIDKSR 565
SSN +LE++LY+ + D+ + ++Q L+ E + + + + N+ I+ SR
Sbjct: 89 SSNMQLEQQLYSDL---DHINVLQQELKVETARLENEQKSYEEMKQNMAINNSR 139
>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 25.4 bits (53), Expect = 9.2
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -2
Query: 339 FITLWENNRVYFKIHNTKYNQYLKLSSTTDCNTQDRVIFGT 217
F+ ++E N + H+ K+N+Y + S N RV+ GT
Sbjct: 735 FLRVYEKNTLSEIAHH-KFNEYEMVESIILMNDDKRVVVGT 774
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,888,969
Number of Sequences: 5004
Number of extensions: 57116
Number of successful extensions: 192
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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