Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10e18r
(781 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1082 - 8847795-8848033,8848511-8848724 32 0.59
04_04_1571 + 34504087-34504421,34505002-34505731,34506091-345120... 30 2.4
01_01_0758 + 5843702-5843874,5844021-5844083,5844174-5844290,584... 29 4.1
11_01_0059 - 444991-446908,447595-448218,448431-448861,450974-45... 29 5.5
04_03_0074 - 10705413-10705523,10705602-10706330 29 5.5
12_01_0060 - 499291-501228 28 7.2
01_06_0795 - 32051794-32053362,32053452-32053595,32054102-320549... 28 7.2
07_03_1069 + 23743031-23744062 28 9.6
06_01_0353 + 2545995-2546208,2546362-2546492,2546846-2546929,254... 28 9.6
>06_01_1082 - 8847795-8848033,8848511-8848724
Length = 150
Score = 31.9 bits (69), Expect = 0.59
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -2
Query: 189 WFLQPTKYENDVLFFIYNREYNDALKLG 106
W T Y DVL F YN+EY+D +G
Sbjct: 59 WLAGKTFYAGDVLVFKYNKEYHDVAVVG 86
>04_04_1571 + 34504087-34504421,34505002-34505731,34506091-34512077,
34512493-34513964,34514114-34514377,34514761-34514978,
34515759-34516030,34516190-34516559,34516578-34516797,
34516819-34518931,34518941-34519193,34519269-34519401,
34520597-34521114,34521207-34522115,34522195-34522368,
34522833-34522882,34523963-34524035,34524413-34524477,
34524736-34525522,34525622-34525878,34525989-34526109,
34526315-34526956
Length = 5320
Score = 29.9 bits (64), Expect = 2.4
Identities = 24/84 (28%), Positives = 40/84 (47%)
Frame = -2
Query: 774 SCVLAVSAGVTEMSAGSMSSSNKELEEKLYNSIXTGDYDSAVRQSLEYENQGKGSIIQNV 595
S L+ S G +GS+ ++ LE N I T D +RQ L S++ N+
Sbjct: 1126 SSALSYSLGWLSPPSGSVIAAQL-LELGKNNEIVT---DQVLRQELALVMPKIYSLLSNL 1181
Query: 594 VNNLIIDKSRNTMEYCYKLWVGNG 523
+ + +D + +E C +WVG+G
Sbjct: 1182 IGSDEMDIVKVVLEGCRWIWVGDG 1205
>01_01_0758 +
5843702-5843874,5844021-5844083,5844174-5844290,
5847180-5847945
Length = 372
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/59 (27%), Positives = 26/59 (44%)
Frame = -2
Query: 435 LALKLGPTLDPANERLAYGDGKEKNSDLISWKFITLWENNRVYFKIHNTKYNQYLKLSS 259
+AL GP L P N A+G G E S + + W + + N ++ ++ L S
Sbjct: 146 IALYSGPALSPLNHHRAFGGGAESGSSGAATR--ARWVTGTLLMLLSNVTWSLWIVLMS 202
>11_01_0059 - 444991-446908,447595-448218,448431-448861,450974-452293
Length = 1430
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +1
Query: 25 PGEDVRETSYFTIVSKCHTVSRSVHNPTELQSIV 126
PGE +R T + S CHT + V T + IV
Sbjct: 1377 PGETIRVTKNLRVCSDCHTAIKLVSRITHREIIV 1410
>04_03_0074 - 10705413-10705523,10705602-10706330
Length = 279
Score = 28.7 bits (61), Expect = 5.5
Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 2/101 (1%)
Frame = -1
Query: 406 SRERETCIRRW*GKEQRPHQLEVHYLVGEQQSVLQDPQH*VQPVLETKFDD*LQHSRP-C 230
SR R R K Q PHQL G+++ Q+ + + F D + HSR
Sbjct: 157 SRARSEAYRLLQTKNQHPHQLGTAGYAGKEEEWQQEDEEAEESNTPLVFGD-IPHSRARN 215
Query: 229 YIRHQHRRHHQGAV-VPPAHEVRKRRPVLHLQSRVQRCFEA 110
+ R +++++ G + +P + R R + L + Q EA
Sbjct: 216 WARARYQKNVDGTIFMPYPEDQRVYRAINELVAEQQASQEA 256
>12_01_0060 - 499291-501228
Length = 645
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +1
Query: 25 PGEDVRETSYFTIVSKCHTVSRSVHNPTELQSIV 126
PGE +R T + S CHT + + T + IV
Sbjct: 592 PGETIRVTKNLRVCSDCHTAIKLISRITHREIIV 625
>01_06_0795 -
32051794-32053362,32053452-32053595,32054102-32054965,
32055335-32055892
Length = 1044
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -2
Query: 225 FGTNTADTTREQWFLQPTKYENDVLFFIYNRE 130
FG +T+ E LQP K EN +LF + R+
Sbjct: 753 FGCSTSIMVSEGDLLQPEKIENGILFNVVKRD 784
>07_03_1069 + 23743031-23744062
Length = 343
Score = 27.9 bits (59), Expect = 9.6
Identities = 16/41 (39%), Positives = 18/41 (43%)
Frame = -1
Query: 241 SRPCYIRHQHRRHHQGAVVPPAHEVRKRRPVLHLQSRVQRC 119
SRPC R + R V PPA RKR P + RC
Sbjct: 58 SRPCRARKRGRPSVVPPVSPPAGAKRKRAPAYPVPVAPLRC 98
>06_01_0353 +
2545995-2546208,2546362-2546492,2546846-2546929,
2546972-2547316,2547327-2547582,2547683-2547879
Length = 408
Score = 27.9 bits (59), Expect = 9.6
Identities = 15/54 (27%), Positives = 23/54 (42%)
Frame = -2
Query: 708 KELEEKLYNSIXTGDYDSAVRQSLEYENQGKGSIIQNVVNNLIIDKSRNTMEYC 547
KE + KL I + + + +L + G G IQN +N + N YC
Sbjct: 156 KEYQSKLAALIGQKNATAILSDALYIVSTGTGDFIQNYYHNASLSSRYNVNSYC 209
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,368,804
Number of Sequences: 37544
Number of extensions: 387043
Number of successful extensions: 1286
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1285
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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