Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10e18r
(781 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_43283| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_12473| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_31658| Best HMM Match : Arm (HMM E-Value=0.91) 29 3.2
SB_59246| Best HMM Match : Podocalyxin (HMM E-Value=0.13) 29 3.2
SB_56761| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_18540| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_11880| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.92) 29 4.2
SB_1794| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_5839| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_18417| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_59616| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.8
SB_53815| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.8
SB_14042| Best HMM Match : WD40 (HMM E-Value=2.1) 28 9.8
>SB_43283| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 278
Score = 30.3 bits (65), Expect = 1.8
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 3/75 (4%)
Frame = -3
Query: 686 TTASSPVTTTALSVRAWNTRTKARAPXXXXXXXXX---XXXRVGTPWSTATSCGSATDST 516
T +SPV TT+L+ T + A AP TP T + S D+T
Sbjct: 150 TLTASPVVTTSLASAPVVTTSLASAPVETTSLASTPVETTSLASTPVDTTLTASSPVDTT 209
Query: 515 LSESTSPITLDSSWP 471
L+ S+ T ++ P
Sbjct: 210 LTASSPVETTPTASP 224
>SB_12473| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 387
Score = 29.9 bits (64), Expect = 2.4
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
Frame = +1
Query: 493 IGEVLSDNVLSVAD---PQLVAVLH-GVPTLVNDQVVNYILDDGALALVLVFQALT--DS 654
+ EV+ VL+ P A +H G+P V VN + G A+ L +QA+ DS
Sbjct: 54 VSEVILGQVLTAGQGQGPARQAAIHAGIPACVPAYGVNMLCGSGLKAVALGYQAVAMGDS 113
Query: 655 AVVVTG 672
+VV G
Sbjct: 114 NIVVAG 119
>SB_31658| Best HMM Match : Arm (HMM E-Value=0.91)
Length = 249
Score = 29.5 bits (63), Expect = 3.2
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -2
Query: 435 LALKLGPTLDPANERLAYGD 376
+++KL P +DP RLAYGD
Sbjct: 6 ISVKLPPDIDPTKARLAYGD 25
>SB_59246| Best HMM Match : Podocalyxin (HMM E-Value=0.13)
Length = 1027
Score = 29.5 bits (63), Expect = 3.2
Identities = 18/67 (26%), Positives = 28/67 (41%)
Frame = -3
Query: 686 TTASSPVTTTALSVRAWNTRTKARAPXXXXXXXXXXXXRVGTPWSTATSCGSATDSTLSE 507
TTA++ VTT + T T A A V T +T T+ +A + +
Sbjct: 571 TTAAATVTTVTTAAATVTTVTTAAATVTTVTTAAATVTTVATAAATVTTVTTAAATLTTV 630
Query: 506 STSPITL 486
+T+ TL
Sbjct: 631 TTAAATL 637
Score = 29.1 bits (62), Expect = 4.2
Identities = 19/66 (28%), Positives = 30/66 (45%)
Frame = -3
Query: 686 TTASSPVTTTALSVRAWNTRTKARAPXXXXXXXXXXXXRVGTPWSTATSCGSATDSTLSE 507
TTA++ VTT A + T T A A V T +T T+ +A +TL+
Sbjct: 601 TTAAATVTTVATAAATVTTVTTAAATLTTVTTAAATLTTVTTAAATLTTVTTAA-ATLTT 659
Query: 506 STSPIT 489
+ + +T
Sbjct: 660 AAATVT 665
Score = 28.3 bits (60), Expect = 7.4
Identities = 18/67 (26%), Positives = 28/67 (41%)
Frame = -3
Query: 686 TTASSPVTTTALSVRAWNTRTKARAPXXXXXXXXXXXXRVGTPWSTATSCGSATDSTLSE 507
TTA++ VTT + T T A A V T +T T+ +A + +
Sbjct: 581 TTAAATVTTVTTAAATVTTVTTAAATVTTVATAAATVTTVTTAAATLTTVTTAAATLTTV 640
Query: 506 STSPITL 486
+T+ TL
Sbjct: 641 TTAAATL 647
>SB_56761| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 633
Score = 29.5 bits (63), Expect = 3.2
Identities = 20/67 (29%), Positives = 26/67 (38%)
Frame = -2
Query: 324 ENNRVYFKIHNTKYNQYLKLSSTTDCNTQDRVIFGTNTADTTREQWFLQPTKYENDVLFF 145
E N Y +NT+YN T+ NT+ + T + E T Y D
Sbjct: 365 EYNTEYNTEYNTEYNTEYNTEYNTEYNTEYNTEYNTEYTEYITEYITEYNTDYNTD---- 420
Query: 144 IYNREYN 124
YN EYN
Sbjct: 421 -YNTEYN 426
>SB_18540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 286
Score = 29.1 bits (62), Expect = 4.2
Identities = 20/74 (27%), Positives = 32/74 (43%)
Frame = -3
Query: 716 VLTKNSRRNCTTASSPVTTTALSVRAWNTRTKARAPXXXXXXXXXXXXRVGTPWSTATSC 537
VLT +R A++ +TT +V A N T P TP++T T+
Sbjct: 84 VLTVLLKRELIAATATITTYTATVTAPNATT--TTPTATTTTTTTTTTT--TPYATTTTP 139
Query: 536 GSATDSTLSESTSP 495
+ T + + +TSP
Sbjct: 140 NTTTTTPNTTTTSP 153
>SB_11880| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.92)
Length = 425
Score = 29.1 bits (62), Expect = 4.2
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Frame = -3
Query: 686 TTASSPVTTTALSVRAWNTRTKARAPXXXXXXXXXXXXRVGTPWSTATS---CGSATDST 516
TT ++ TTTA + T T A A T +TAT +AT+ T
Sbjct: 128 TTTAAEATTTAAATEVTTTTTAAEATTTATEVTTTTTATEVTMTTTATELTMTTTATEVT 187
Query: 515 LSESTSPITLDSS 477
++ + +T+ ++
Sbjct: 188 MTTTAKEVTMTTT 200
>SB_1794| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 177
Score = 29.1 bits (62), Expect = 4.2
Identities = 18/67 (26%), Positives = 28/67 (41%)
Frame = -2
Query: 324 ENNRVYFKIHNTKYNQYLKLSSTTDCNTQDRVIFGTNTADTTREQWFLQPTKYENDVLFF 145
E N Y +NT+YN T+ NT+ + T ++ + T+Y +
Sbjct: 84 EYNTEYNTEYNTEYNTEYNTEYNTEYNTEYNTEYNTEYNTEYNTEYNTEYTEYNTE---- 139
Query: 144 IYNREYN 124
YN EYN
Sbjct: 140 -YNTEYN 145
>SB_5839| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 778
Score = 28.3 bits (60), Expect = 7.4
Identities = 24/126 (19%), Positives = 42/126 (33%)
Frame = -3
Query: 713 LTKNSRRNCTTASSPVTTTALSVRAWNTRTKARAPXXXXXXXXXXXXRVGTPWSTATSCG 534
+T+ + T ++ VTTT + T A A T TAT+
Sbjct: 307 VTETAAAATATVTATVTTTTTATATATTTATATATTTATATATATATATATATVTATATA 366
Query: 533 SATDSTLSESTSPITLDSSWPXXXXXXXXXXXXXXXXSAPLLIPRTRDLHTAMVRKRTAT 354
+AT + T +T ++ +A + + T TA V +
Sbjct: 367 TATVTATVTVTVTVTATATATVTATATVTVTAAAARATATVTVTVT---VTATVHNSNSN 423
Query: 353 SSVGSS 336
S+ S+
Sbjct: 424 SNSNSN 429
>SB_18417| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 441
Score = 28.3 bits (60), Expect = 7.4
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +3
Query: 513 QCAVRCRPTACSSTPWCSDSCQ*SGC*LH 599
+C C+ CS++ C SC GC L+
Sbjct: 219 KCGKDCQQVVCSASGKCDQSCDGEGCNLY 247
>SB_59616| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2735
Score = 27.9 bits (59), Expect = 9.8
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -3
Query: 542 SCGSATDSTLSESTSPITLDSSWP 471
S GS TDS S STSP+ L + P
Sbjct: 619 SAGSGTDSASSRSTSPLNLPYTSP 642
>SB_53815| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 351
Score = 27.9 bits (59), Expect = 9.8
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Frame = +1
Query: 517 VLSVADPQLVAVLHGVPTLVNDQVVNYILDDGALALV----LVFQALTDSAVVVTGXDAV 684
VLS+A L+A + G+P L + V+++ D V LVF +T + +VV +
Sbjct: 110 VLSLAISDLLASIIGIPLLTVETWVDFVTTDSICRAVRYFQLVFSKITFNNLVVIAAEKY 169
Query: 685 VQFLLEFFVRTAHASRG 735
+ F++ ++ +G
Sbjct: 170 LGINHLFYLPSSRFVKG 186
>SB_14042| Best HMM Match : WD40 (HMM E-Value=2.1)
Length = 236
Score = 27.9 bits (59), Expect = 9.8
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -3
Query: 542 SCGSATDSTLSESTSPITLDSSWP 471
S GS TDS S STSP+ L + P
Sbjct: 64 SAGSGTDSASSRSTSPLNLPYTSP 87
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,244,818
Number of Sequences: 59808
Number of extensions: 454004
Number of successful extensions: 1536
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1498
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2131907602
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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