Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10e18r
         (781 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g59210.2 68418.m07421 myosin heavy chain-related contains wea...    31   1.1  
At5g59210.1 68418.m07420 myosin heavy chain-related contains wea...    31   1.1  
At4g10950.1 68417.m01780 GDSL-motif lipase/hydrolase family prot...    29   3.5  
At1g64255.1 68414.m07280 SWIM zinc finger family protein contain...    28   8.0  

>At5g59210.2 68418.m07421 myosin heavy chain-related contains weak
           similarity to Myosin heavy chain, gizzard smooth muscle
           (Swiss-Prot:P10587) [Gallus gallus]
          Length = 433

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
 Frame = -2

Query: 723 MSSSNKELE-EKLY--NSIXTGDYDSAVRQSLEYENQGKGSIIQNVVNNLIIDKSR 565
           M   N+  E EKL+  NS  +  Y  ++  S ++ENQ K  + QNV    ++DK R
Sbjct: 288 MEIDNQSSEIEKLFEENSNLSASYQESINISNQWENQVKECLKQNVELREVLDKLR 343


>At5g59210.1 68418.m07420 myosin heavy chain-related contains weak
           similarity to Myosin heavy chain, gizzard smooth muscle
           (Swiss-Prot:P10587) [Gallus gallus]
          Length = 434

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
 Frame = -2

Query: 723 MSSSNKELE-EKLY--NSIXTGDYDSAVRQSLEYENQGKGSIIQNVVNNLIIDKSR 565
           M   N+  E EKL+  NS  +  Y  ++  S ++ENQ K  + QNV    ++DK R
Sbjct: 289 MEIDNQSSEIEKLFEENSNLSASYQESINISNQWENQVKECLKQNVELREVLDKLR 344


>At4g10950.1 68417.m01780 GDSL-motif lipase/hydrolase family protein
           similar to family II lipase EXL1 GI:15054382 from
           [Arabidopsis thaliana]; contains Pfam profile PF00657:
           GDSL-like Lipase/Acylhydrolase
          Length = 400

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 25/111 (22%), Positives = 53/111 (47%), Gaps = 2/111 (1%)
 Frame = -2

Query: 750 GVTEMSAGS--MSSSNKELEEKLYNSIXTGDYDSAVRQSLEYENQGKGSIIQNVVNNLII 577
           GV   SAG+  + SS  EL +++  ++    +    +Q +    + K S  + +V+N + 
Sbjct: 143 GVNYASAGAGIILSSGSELGQRVSFAMQVEQFVDTFQQMILSIGE-KAS--ERLVSNSVF 199

Query: 576 DKSRNTMEYCYKLWVGNGQHIVRKYFPYNFRLIMAGNFVKLIYRNYNLALK 424
             S    +Y +  ++ N  ++   Y P+NF   +A N  + +   YN+ ++
Sbjct: 200 YISIGVNDYIH-FYIRNISNVQNLYTPWNFNQFLASNMRQELKTLYNVKVR 249


>At1g64255.1 68414.m07280 SWIM zinc finger family protein contains
           Pfam profile PF04434: SWIM zinc finger
          Length = 750

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -2

Query: 585 LIIDKSRNTMEYCYKLWVGNGQHIVRKYFPYNF 487
           +++D      EY  KL + +G     KYFP  F
Sbjct: 386 IVVDTKNLNCEYQLKLMIASGVDAANKYFPLAF 418


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,273,330
Number of Sequences: 28952
Number of extensions: 300769
Number of successful extensions: 933
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 933
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1746037600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)