Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10e18f
(633 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription te... 31 0.18
SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr ... 29 0.74
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa... 28 0.97
SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine decarboxylase|Schizo... 28 1.3
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 26 5.2
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po... 26 5.2
SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces po... 25 6.9
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 25 6.9
SPCC1235.07 |fta7|sma7, cnl3|Sim4 and Mal2 associated |Schizosac... 25 6.9
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 25 6.9
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc... 25 6.9
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc... 25 6.9
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 25 9.1
SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase Exg2|Schizosacch... 25 9.1
>SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription
termination factor Reb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 504
Score = 30.7 bits (66), Expect = 0.18
Identities = 15/61 (24%), Positives = 30/61 (49%)
Frame = +3
Query: 228 SIIQNVVNNLIIDKSRNTMEYCYKLWVGNGQHIVRKYFPYNFRLIMAGNFVKLIYRNYNL 407
+II V+N I+D+ + ++C ++W G +R ++ N ++ K IY +
Sbjct: 247 AIISQEVHNFIMDQGWSEYQFCNQIWAGKCPKTIRMFYS-NLYKKLSHRDAKSIYHHVRR 305
Query: 408 A 410
A
Sbjct: 306 A 306
>SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 255
Score = 28.7 bits (61), Expect = 0.74
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +3
Query: 72 VLAVSAGVTEMSAGSMSSSNKELEEKLYNSILTGDYDSAVRQSLEYENQGKGSII 236
V+ +AG+ + S+ N+++ K+ L G Y +A ++ QGKGS+I
Sbjct: 91 VMIANAGIA-IPHLSLEDKNEDIWTKVVGINLNGAYYTAQAAGHHFKKQGKGSLI 144
>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 889
Score = 28.3 bits (60), Expect = 0.97
Identities = 21/78 (26%), Positives = 32/78 (41%)
Frame = +3
Query: 99 EMSAGSMSSSNKELEEKLYNSILTGDYDSAVRQSLEYENQGKGSIIQNVVNNLIIDKSRN 278
EM S N LE D D R ++ + Q +++++ NL I + N
Sbjct: 404 EMGYTQKSIENDMLESFQKGVFRINDLDCLGRTNV-IQYQISRLVLKDIFFNLQIGVTFN 462
Query: 279 TMEYCYKLWVGNGQHIVR 332
+EY LW NG I +
Sbjct: 463 ILEYLRHLWSNNGDAIAK 480
>SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine
decarboxylase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 437
Score = 27.9 bits (59), Expect = 1.3
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = -2
Query: 293 AVLHGVPTLVNDQVVNYILDDGALALVLVFQALTD-SAVVVTGEDAVVQFLLEFFVRTAH 117
++LHG P L D+V N+ L +VLVF+A D +V G+ V L V ++H
Sbjct: 381 SILHGHPLLRGDEVGNFELGS---TVVLVFEAPADFEFLVKQGQKVRVGLPLGRVVPSSH 437
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.8 bits (54), Expect = 5.2
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +3
Query: 87 AGVTEMSAGSMSSSNKELEEKLYNSILTGDYDSAVRQSLE 206
A + + S + + +LE+ + ++LTGD SAV+ LE
Sbjct: 537 AEIVKDSFKIFNPEDSDLEKNITEALLTGDVLSAVKACLE 576
>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1159
Score = 25.8 bits (54), Expect = 5.2
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = +1
Query: 274 GTPWSTATSCGSATDSTLSESTSP 345
GT A S GSAT T SE T+P
Sbjct: 927 GTSNKPAFSFGSATSKTTSEGTAP 950
>SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 481
Score = 25.4 bits (53), Expect = 6.9
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +3
Query: 282 MEYCYKLWVGNGQHIVRKYFPY 347
+EYC +L V G H++ + + Y
Sbjct: 140 LEYCLRLLVNYGDHVLTEKYTY 161
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1428
Score = 25.4 bits (53), Expect = 6.9
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -2
Query: 368 GHDESKVIGEVLSDNVLSVADPQLVAVLHGVPTLVNDQ 255
G++E +IG + + + + L+ V GVPTL+ Q
Sbjct: 1013 GNEEKPIIGGIEFSSGMGLLHTALLGVYAGVPTLLIKQ 1050
>SPCC1235.07 |fta7|sma7, cnl3|Sim4 and Mal2 associated
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 244
Score = 25.4 bits (53), Expect = 6.9
Identities = 15/54 (27%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Frame = +3
Query: 123 SSNKELEEKLYNSILTGDYDSAVRQSLEYEN---QGKGSIIQNVVNNLIIDKSR 275
SSN +LE++LY+ + D+ + ++Q L+ E + + + + N+ I+ SR
Sbjct: 89 SSNMQLEQQLYSDL---DHINVLQQELKVETARLENEQKSYEEMKQNMAINNSR 139
>SPCC1235.05c |fft2||fun thirty related protein
Fft2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1284
Score = 25.4 bits (53), Expect = 6.9
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +3
Query: 96 TEMSAGSMSSSNKELEEKLYNSILTGDYDSAVRQSLEYENQGKGSII 236
TEM + ++ NKEL E + + D ++AV S + S++
Sbjct: 1158 TEMKSETVEGDNKELRETMKGENVQTDSNAAVPSSKSSTEEPNESVL 1204
>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 25.4 bits (53), Expect = 6.9
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +3
Query: 501 FITLWENNRVYFKIHNTKYNQYLKLSSTTDCNTQDRVIFGT 623
F+ ++E N + H+ K+N+Y + S N RV+ GT
Sbjct: 735 FLRVYEKNTLSEIAHH-KFNEYEMVESIILMNDDKRVVVGT 774
>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
polymerase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1120
Score = 25.4 bits (53), Expect = 6.9
Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 9/122 (7%)
Frame = +3
Query: 123 SSNKELEEKLYNSILTGDYDSAVRQ-SLEYENQGKGSIIQNVVNNLIIDKSRNTMEYCYK 299
S+N +S+LT D + + SLE+ NQG N+ +++KS + +
Sbjct: 214 SANLNALRSSLSSLLTESIDLPIDEVSLEFGNQGDTF---NLARQKLLEKS--AILSAAE 268
Query: 300 LWVGNGQHIVRK---YFPYNFRLIMAGNFVKL---IYRNYNLA--LKLGPTLDPANERLA 455
+W + ++ + P N + +V+L +L L L +LD N+RL
Sbjct: 269 VWKSEHESVLNRGNLQVPKNVSSLFYSWYVQLEQLFKEEISLIDDLALNESLDKKNDRLI 328
Query: 456 YG 461
YG
Sbjct: 329 YG 330
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 25.0 bits (52), Expect = 9.1
Identities = 17/67 (25%), Positives = 33/67 (49%)
Frame = -2
Query: 332 SDNVLSVADPQLVAVLHGVPTLVNDQVVNYILDDGALALVLVFQALTDSAVVVTGEDAVV 153
S + VA PQ + +L +PT ++ + ++ +LA +L + V +TG + +
Sbjct: 2936 STGITLVAAPQSL-ILQDLPTAISALKITHVDLTPSLASILTPKTAPLLRVFITGGEQIK 2994
Query: 152 QFLLEFF 132
Q LL +
Sbjct: 2995 QELLNIW 3001
>SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase
Exg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 570
Score = 25.0 bits (52), Expect = 9.1
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = +3
Query: 366 AGNFVKLIYRNYNLALKLGPTLDPANERLAYGDGKEKNSDLISW 497
AG + I+ Y+ +++ P + P NE YG + +L W
Sbjct: 125 AGLYTMGIFDKYDDSVQANPNVPPLNEPFPYGRLPIRGVNLGGW 168
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,371,345
Number of Sequences: 5004
Number of extensions: 45875
Number of successful extensions: 158
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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